Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01095 ATGAGAAGGTTCACGTGGTTAACGCCGTATCGGCGCCATTTTCTTTCGCCTGTGACCTCAGAATCGCTCGTGGATAAAGGAGATTCGTTCAACAAATTCTTATCGTCTCGCCAATCCTTTTTGCTCGCACGAGCTTTGGTCAATTGCGGTTTCGTCACGAAAACGGAGGAGTCTCGGGTTCCGAGAGCACCGTTAGGATATCGTTATGTTCATGCCACAGCATTTTCTTCTTCGGCTGACCGAGACTTCTATCGAGTTCTCGGTGTTCCTGAAAATGCCAGTCAGGACGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCTAAGAGGAAGTTTCAAGATATAAGAGAAGCTTATGAGACATTGAGAGACTCTAAAAAGAGAGCAGAGTATGACAAGATGCGTACTCGTGGTTCAGAAGGCGTAGAATATGACCATAATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAACAACTCAATTCTCATCAAATATAGAGGTGGAGTTGTCTCTTAGCTTCTCAGAAGCAGCAAGAGGATGCACCAAACATGTGTCATTTGATGCATCAGTTCCCTGTGATTATTGTAATGGGCGGGGCTATCCACTTGATGCCATCCCAAAAGTTTGTCCAACATGCCGGGGCTTAGGTCAAGTTACAATTCCTCCATTTACGTCAACATGCATTACTTGTAAAGGATCAGGCCATATTATTAAGGACTTTTGTGTCTCGTGTAGAGGATCTGGGGTGGTTGAAGGAGTTAAAGAGGTTAAAGTCACAATACCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGCCGACCTGGAAGTTTATACATTAAAATAAAGGTCGCTGAGGATTCAATCTTTGTCAGAGATGGTGCAGATATCTACGTGGATTCTAATATTAGTTTTACACAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCAGGGAGGATGCAATTAAAAATACCCAAGGGTGTTCAACATGGACAGCTTCTGGTATTAAGAGGCAAAGGACTACCAAAGCATGGATATCTTGTACATCATGGGGATCAGTATGTACGATTCCGTGTTAACTTTCCCATTGAAATCAATGAACGACAACGTGCTATTCTTGAAGAACTTGCAAAGGAGGAAATAAAGGAGGGAAACAGCACTTCATTTGAAGGAAATTGGTGGCAGCAAATTCTTGAACACATGACGGGTCCTAAGTTTATGCTGGAACTATCTTTGCTGATGTTAATCCTTGTCTTCATTAACAAAGTGTTGAGCTGA 1407 0.4222 MRRFTWLTPYRRHFLSPVTSESLVDKGDSFNKFLSSRQSFLLARALVNCGFVTKTEESRVPRAPLGYRYVHATAFSSSADRDFYRVLGVPENASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEGVEYDHNDAERFRNAYRSHFSDSFHKVFSEIFEEATTQFSSNIEVELSLSFSEAARGCTKHVSFDASVPCDYCNGRGYPLDAIPKVCPTCRGLGQVTIPPFTSTCITCKGSGHIIKDFCVSCRGSGVVEGVKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVAEDSIFVRDGADIYVDSNISFTQAILGGKVEVPTLSGRMQLKIPKGVQHGQLLVLRGKGLPKHGYLVHHGDQYVRFRVNFPIEINERQRAILEELAKEEIKEGNSTSFEGNWWQQILEHMTGPKFMLELSLLMLILVFINKVLS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01095 468 CDD DnaJ 82 136 IPR001623 -
Cca05g01095 468 Gene3D DnaJ domain 79 192 IPR036869 -
Cca05g01095 468 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 446 - -
Cca05g01095 468 Gene3D - 193 323 - -
Cca05g01095 468 SMART dnaj_3 81 139 IPR001623 -
Cca05g01095 468 Gene3D - 252 286 - -
Cca05g01095 468 Gene3D - 217 251 - -
Cca05g01095 468 CDD DnaJ_C 193 405 - -
Cca05g01095 468 Pfam DnaJ domain 82 144 IPR001623 -
Cca05g01095 468 Coils Coil 406 426 - -
Cca05g01095 468 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 30 446 - -
Cca05g01095 468 Pfam DnaJ central domain 222 278 IPR001305 GO:0031072|GO:0051082
Cca05g01095 468 Hamap Chaperone protein DnaJ [dnaJ]. 79 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca05g01095 468 Pfam DnaJ C terminal domain 195 405 IPR002939 -
Cca05g01095 468 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Cca05g01095 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 325 IPR008971 GO:0006457|GO:0051082
Cca05g01095 468 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072|GO:0051082
Cca05g01095 468 Gene3D - 326 433 - -
Cca05g01095 468 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Cca05g01095 468 PRINTS DnaJ domain signature 84 102 IPR001623 -
Cca05g01095 468 PRINTS DnaJ domain signature 102 117 IPR001623 -
Cca05g01095 468 PRINTS DnaJ domain signature 119 139 IPR001623 -
Cca05g01095 468 PRINTS DnaJ domain signature 139 158 IPR001623 -
Cca05g01095 468 SUPERFAMILY Chaperone J-domain 78 176 IPR036869 -
Cca05g01095 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 416 IPR008971 GO:0006457|GO:0051082
Cca05g01095 468 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01095 Cca-Chr5 28014234 28025464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01095 82 177 Miscellaneous Gene Families AT1G16680 32.353 4.52e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01095 - - gmx:100809440 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01095 05 28014234 28025464 Cca05g01095 05 28014234 28025464 ECH