Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01078 ATGGCTAATGCTGCTGACTTGATACAGCGCAGGCAGCGTTCTGAATTTCAATCTCAAGTTAGGCGAACACTTTTTACAGCCATAAAGGGAAATCCTGATCTTACTCCATCCATACTGAAACTGGCTCTAAATGATGCTTTGACATATGAGAAGGCAACAAAATCTGGTGGTCCAAATGGCTCTATACGGTTCAGTTCAGAAATAGGTAGACCAGAAAATACAGGGCTTTCTGCTGCCGTGAGTTTATTAGAGGAAGCAAAAAAGGAGATAGACTCGTATGCCAAAGGTGGACCCATTTCCTATGCAGATCTGATCCAATATGCAGCACAAAGTGCTGTCAAGTCTACATTTTTAGCTGCTGCCATTCGCAAATGTGGTGGAAATGAGGAGAAAGGGAATATACTGTACAATGCATACGGATCAAATGGGCAGTGGGGTTTGTTCGATAAGCAATTTGGTAGGGCTGATGCTCAAGACCCAGATCCAGAGGGGAGAGTTCCAATATGGGAGAAGGCAAGTGTACAGGAAATGAAAGACAAGTTTTCTGCTGTAGGCTTTGGTCCTCGCCAGGTGGCTGTTTTGTCTGCATTCTTAGGTCCTGATCAAAGTGCAACAGAAACCTTATTGGCCAGTGATCCTGATGTTGCTCCATGGGTTCAGAAATACCAAAGGAGTCGTGAAACAGTCTCTCAGACAGATTATGAGGTTGATCTGATAACCACTTTCACAAAACTGAGTACCTTGGGCCAACAAATCAACTATGAGGCATATACATATGCTCCACCAAAGATTGACATTACCAAACTCAAATTGTAA 816 0.4326 MANAADLIQRRQRSEFQSQVRRTLFTAIKGNPDLTPSILKLALNDALTYEKATKSGGPNGSIRFSSEIGRPENTGLSAAVSLLEEAKKEIDSYAKGGPISYADLIQYAAQSAVKSTFLAAAIRKCGGNEEKGNILYNAYGSNGQWGLFDKQFGRADAQDPDPEGRVPIWEKASVQEMKDKFSAVGFGPRQVAVLSAFLGPDQSATETLLASDPDVAPWVQKYQRSRETVSQTDYEVDLITTFTKLSTLGQQINYEAYTYAPPKIDITKLKL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01078 271 Pfam Peroxidase 20 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01078 271 Gene3D - 4 170 - -
Cca05g01078 271 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 2 270 IPR044831 GO:0004601|GO:0034599
Cca05g01078 271 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC 2 270 - -
Cca05g01078 271 SUPERFAMILY Heme-dependent peroxidases 5 249 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca05g01078 271 PRINTS Plant ascorbate peroxidase signature 35 50 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca05g01078 271 PRINTS Plant ascorbate peroxidase signature 53 63 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca05g01078 271 PRINTS Plant ascorbate peroxidase signature 67 91 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca05g01078 271 Gene3D - 171 236 - -
Cca05g01078 271 CDD plant_peroxidase_like 20 260 - -
Cca05g01078 271 ProSiteProfiles Plant heme peroxidase family profile. 15 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01078 Cca-Chr5 27712735 27719244 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01078 K00434 - gmx:100795192 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01078 05 27712735 27719244 Cca05g01078 05 27712735 27719244 ECH