Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01068 ATGGGTTCCTTGAGCACAATGAAAAAGCCACATGCCGTGTGCATACCGTACCCAGCACAAGGCCACATAAACCCAATGCTAAAGCTAGCAAAACTCCTTCACTTGAGAGGCTTCCACATCACCTTCGTTAACACCGAGTACAACCACAAACGCCTTCTCAAGGCAAGAGGTCCTCATTCCCTCGATGGCCTCTCTTCCTTTCGCTTTGAAACCATCCCCGATGGCCTACCTGAATCCGATGTCGATGCCACACAGGATATAGCTTCCCTCTGTGACTCCACTAGAACAACTTGCTCCCCTCACTTCAAAAACCTCCTTAGAAAAATCAATGCTTATTCAGATGCCCCTCCTGTCTCTTGCATACTTTCTGATGGTGTCATGAGCTTCACACTTGATGCTGCTCAGGAACTGGGTGTCCCAGAGGTGCTGTTTTGGACCACTAGTGCATGTGGCTTCATGTGTTACGTCCAATACCAACAACTCGTTCAAAAGGGCCTAACACCCCTCAAAGACTCGAGTTATCTCACGAATGGGTATTTGGAGACTACCATTGATTGGATACCAGGTATCAAGGAAATTCGATTGAGGGATATTCCGAGTTTCGTTAGAACCACAGATTCAGATGATCTTATGATTGACTTCATACTAGGGGAGTGTAGGAGAGCTCAAAGAGCTTCTGCAATACTTTTGAACACGTTTGATGACTTAGAGCATGACGTGTTGGAAGGGTTATCATCCATTTTGCCTCCTGTTTATTCCATAGGTCCTTTGAATTTGCTCGTGAAGGATGCTGATGATAAGGAGTTGAACGCAATTGGGTCCAATCTTTGGAAGGAGGAGTTTGAGTGTGTGGAGTGGCTTGACACCAAAGAGCCCAATAGTGTTGTTTACGTGAATTTTGGAAGCATCACGGTTATGACGAGTGAGCAATTGATTGAATTTGCATGGGGACTTGCTAATAGCAACAAGACCTTTTTGTGGGTCATAAGACCAGATCTTGTGGCGGGTGAAAACGCTGTTGTACCTCAAGAGTTTGTGGAACAGACAAAAAACAGAGGCATGTTATCTAGTTGGTGTCCTCAAGAGCAAGTCCTGGCACATCCCGCGATTGGAGGGTTTTTGACACACAGTGGTTGGAATTCAACGTTGGAAAGTGTGTGTGGAGGTGTTCCTATGATATGTTGGCCTTTCTTTGCTGAGCAACAAACCAATTGTCGGTTCAGTTGCAATGAATGGGGTATTGGATTGGAGATTGAAGATGTTAAGAGGGACAAAATAGAAAGCCTCGTGAGGGAGTTGATGGACGGTGAAAAGGGTAAAGAGATGAAGGACAAAGCTTTGCAATGGAAGGAATTGGCAAAAGCTGCTGCTTCTTGCCCTCATGGATCTTCGTTTCTTAATTTAGACAACATGGTTCGTCAAGTTCTTATGGGTCAAAATGCTAAAAAGTAG 1452 0.4497 MGSLSTMKKPHAVCIPYPAQGHINPMLKLAKLLHLRGFHITFVNTEYNHKRLLKARGPHSLDGLSSFRFETIPDGLPESDVDATQDIASLCDSTRTTCSPHFKNLLRKINAYSDAPPVSCILSDGVMSFTLDAAQELGVPEVLFWTTSACGFMCYVQYQQLVQKGLTPLKDSSYLTNGYLETTIDWIPGIKEIRLRDIPSFVRTTDSDDLMIDFILGECRRAQRASAILLNTFDDLEHDVLEGLSSILPPVYSIGPLNLLVKDADDKELNAIGSNLWKEEFECVEWLDTKEPNSVVYVNFGSITVMTSEQLIEFAWGLANSNKTFLWVIRPDLVAGENAVVPQEFVEQTKNRGMLSSWCPQEQVLAHPAIGGFLTHSGWNSTLESVCGGVPMICWPFFAEQQTNCRFSCNEWGIGLEIEDVKRDKIESLVRELMDGEKGKEMKDKALQWKELAKAAASCPHGSSFLNLDNMVRQVLMGQNAKK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01068 483 CDD GT1_Gtf-like 10 457 IPR002213 GO:0008194
Cca05g01068 483 Gene3D Glycogen Phosphorylase B; 11 458 - -
Cca05g01068 483 ProSitePatterns UDP-glycosyltransferases signature. 358 401 IPR035595 -
Cca05g01068 483 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 6 55 - -
Cca05g01068 483 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 57 476 - -
Cca05g01068 483 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 472 - -
Cca05g01068 483 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 65 441 IPR002213 GO:0008194
Cca05g01068 483 Gene3D Glycogen Phosphorylase B; 278 455 - -
Cca05g01068 483 PANTHER GLYCOSYLTRANSFERASE 6 55 - -
Cca05g01068 483 PANTHER GLYCOSYLTRANSFERASE 57 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01068 Cca-Chr5 27495317 27497380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01068 1 479 Glycosyltransferase AT1G22380 63.636 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01068 - - gmx:100784251 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01068 05 27495317 27497380 Cca05g01068 05 27495317 27497380 ECH