Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01067 ATGGATTCCTTGGGCAGAAGCAGAAGGAAGAAGGCACATGCCGTGTGCGTACCCCACCCAACACAAGGTCACATAAACCCAATGCTAAAGCTAGCAAAAGTCCTTCACTCTAAAGGCTTCCACATAACCATGGTCAACACCGAGTACACCCACAAACGCCTTCTCAAATCAAGAGGTCCTCATTCCCTCAAGGGCATCCCATCATTTCGCTTTGAAACCATCCCCGATGGTCTACCCGAGCCTCTCCTGGACGCCACGCAGGATATACCTTCCCTCTGCGACTCCACCAGAAGAACCTGCTTGCCTCACTTCACAAACCTCCTCACTAAAATCAATAACTCCCACGCACCCCCCGTCACTTGCATAGTTGCTGACGGTGTCATGAGCTTCACTCTTGATGCTGCTCGACAATTGGGTGTCCCTGAGGTCCTGTTTTGGACCCCTAGTGCATCTGGCTTCATGTGTTACGTCCAATTGCAACAACTCTTTCAAAAGGGCCTAATTCCCTTCAAAGACTCAAGTTATCTCACGAATGGGTATTTGGAAACCACTATTGATTGGATACCGGGTATCAAGGAAATTCGATTGAGGGATATTCCAAGTTTCATTAGGACTACCGATTCGGATGATTTTATGCTTGAGTTTTTACGGTGGGAGTGTGGGAGGGCTCGGGAAGCTTCTGCAATAATTTTGAACACGTTTGATGCCATTGAGCATGACGTTTTGGAGGCTTTGTCCTCCATTTTGCCTCCTGTTTATTCCATAGGTCCTTTGAATTTACTTGTCAAGGATATTGATGATGAGGATTTGAATGCCATTGAGTCCAATCTTTGGAAGGAGGAGTTTGAGTGTGTGGAGTGGCTTGACACCAAAGAACCAAATAGTGTTATTTACGTGAATTTTGGGAGCATAACTGTTATGACAAGTGAACAATTGGTTGAGTTTGCATGGGGACTTGCTAATAGCAACAAAACATTTTTGTGGGTTATAAGACCCGATGTTGTGGGGGGTGGAAACGTTGTTCTACCTCGAGAGTTTGTGGAACAGACCAAAAACAGAGGTTTGTTGTCTAATTGGTGTCCTCAAGAGCAAGTTCTAGCTCACCCCGCAATTGGAGGGTTTTTGACACACAGTGGTTGGAATTCAACGTTGGAAAGTGTATGTGGAGGTGTTCCTATGATATGCTGGCCTTTCTTTGCAGAGCAACAAACCAATTGTCGGTTTTGTTGCAAGGAGTGGGGGATTGGTTTGGAGATTGAAGATGTTAAGAGGGACAAAATAGAAAGCCTTGTAAGGGAGTTGATGGATGGTGAAAAGGGTAAACAAATGAAGGATAAAGCCTTGCAATGGAAGGAATTGGCAAAAACTGCTGCTTCTAGCCCTCATGGATCTTCGTTTCTTAATTTGGAGAATTTGATTCGTGAAGTTCTTCTATGCAAAAGCGTTAAAAATTAG 1455 0.4474 MDSLGRSRRKKAHAVCVPHPTQGHINPMLKLAKVLHSKGFHITMVNTEYTHKRLLKSRGPHSLKGIPSFRFETIPDGLPEPLLDATQDIPSLCDSTRRTCLPHFTNLLTKINNSHAPPVTCIVADGVMSFTLDAARQLGVPEVLFWTPSASGFMCYVQLQQLFQKGLIPFKDSSYLTNGYLETTIDWIPGIKEIRLRDIPSFIRTTDSDDFMLEFLRWECGRAREASAIILNTFDAIEHDVLEALSSILPPVYSIGPLNLLVKDIDDEDLNAIESNLWKEEFECVEWLDTKEPNSVIYVNFGSITVMTSEQLVEFAWGLANSNKTFLWVIRPDVVGGGNVVLPREFVEQTKNRGLLSNWCPQEQVLAHPAIGGFLTHSGWNSTLESVCGGVPMICWPFFAEQQTNCRFCCKEWGIGLEIEDVKRDKIESLVRELMDGEKGKQMKDKALQWKELAKTAASSPHGSSFLNLENLIREVLLCKSVKN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01067 484 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 227 441 IPR002213 GO:0008194
Cca05g01067 484 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 57 475 - -
Cca05g01067 484 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 57 - -
Cca05g01067 484 Gene3D Glycogen Phosphorylase B; 13 459 - -
Cca05g01067 484 ProSitePatterns UDP-glycosyltransferases signature. 359 402 IPR035595 -
Cca05g01067 484 Gene3D Glycogen Phosphorylase B; 273 456 - -
Cca05g01067 484 CDD GT1_Gtf-like 12 462 IPR002213 GO:0008194
Cca05g01067 484 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 11 473 - -
Cca05g01067 484 PANTHER GLYCOSYLTRANSFERASE 57 475 - -
Cca05g01067 484 PANTHER GLYCOSYLTRANSFERASE 9 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01067 Cca-Chr5 27480341 27482298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01067 1 478 Glycosyltransferase AT1G22340 61.491 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01067 - - gmx:100805279 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01067 05 27480341 27482298 Cca05g01067 05 27480341 27482298 ECH