Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01064 ATGTCTAGGCCTCTGCAAAGGGGTGTGTCTGGTGGGGTTAGGGTCCCTGAGAGTGGCCATGACTTGTGGGACTCCCAATCTAAGGATAAAACAGAAAAGGAAGATTTGGATAAGAGGGGTTCTTCAGATCATAGCCCTTTTGCTTTGAGGTTTCCTTTGAGATTGATTTTGGGAAATAATTCTGATTCAAAATATGGGAATGGCATAGTTGAGAATGGTTTTGCTTCTGATCCCTTCAGTGTTGGCACCCCACGAAGCCGGCTCAAGTTGATGTTGCTTTCTTTGAAGTTTAGTTTAGTGTTTATAGTTGTTCTGGCTCTTACTGGATCTTTTTGGTGGACCTTATCGATTTCATCCTCATCAAGAGGTCACATTTACCATGGTTATAGAAGACTTCAAGAGAAGCTTGTTTCTGACCTTTTGGATATTGGTGAGTTTTCTCGCGGTCCATTGAGGTTGAAGGAATCGGAGTTCTGTTCTCAGGAATTTGAAAACTTTGTTCCTTGCTATAATGTTTCTGAGAATGTTGAATTGGGAGTTTCTGATGTCAATGAATTTGACCGACAATGCGGCCATGAGCCTAGGCAGAATTGTTTAGTTCTGCCGCCACTGAATTATAAAATTCCCTTTAGGTGGCCTACTGGAAAAGATGTTATCTGGATTGCGAATGTGAAGATCACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTGACAAAGAGGATGATGATGCTGGATGAAGAGCAAATTTCATTTCGTTCTGCCTCTCATATGTTTGATGGTGTTGAAGACTACTCACATCAAATTGCTGAAATGATTGGACTTAGAAATGAATCTTCATTCATTCAAGCTGGGGTTCGAACTATACTAGACATAGGTTGTGGTTATGGTAGTTTTGGAGCACATCTCTTTGACAGTCAGCTTTTAACTATGTGCATTGCAAATTATGAGCCTTCTGGCAGTCAAGTTCAGCTCAGTCTCGAGAGAGGTCTTCCAGCTATGATTGCCTCTTTCACTTCAAAGCAGTTGCCATATCCATCGCTATCCTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGATCAGAAAGATGGCATTTTCTTGATTGAAGCTGATAGACTCTTAAAACCGGGTGGATACTTTGTCTGGACATCACCACTCACAAATGCTCGTAACAAAGAGAATCAGAAAAGGTGGAGGTTTATACAGGACTTTACATTGAATCTGTGCTGGGAAATGTTGTCGCAGCAAGATGAAACTGTTGTATGGAAGAAAACTAGTAAAAAAAGTTGTTATGCTTCAAGAAAGACTCGTTCTGGCCCTTCTCTGTGTGGTAGAGGTATTGATGTGGAGTCTCCATATTATCGAGAACTACAAAACTGCATAGGAGGAATACAGAGCCGTCGTTGGGTTCCAATTGATAAAAGGGAAAGATGGCCTTCCCGGGCTAACTTGAACAAGAACGAGTTGGCAATCTATGGGTTGCAGCCTGATGAATTTACTGAGGACTCTGACAGCTGGAGAACAGCAGTCCAGAATTATTGGTCACTCCTGTCACCTTTAATATTTTCTGATCATCCAAAGAGGCCCGGAGATGAGGACCCTTCACCACCTTACAACATGTTCAGAAATGTGCTAGACATGAATGCTCATCTTGGTGGCTTTAATTCTGCATTGTTGCAAGCTAGAAAGTCTGTGTGGGTGATGAATGTGGTCCCAATAAGTGGACCCAATTATCTTCCCTTGATCCAGGACAGAGGTTTTGTTGGCGTTTTGCATGATTGGTGCGAGGCTTTTCCAACGTACCCTAGAACCTATGACTTGGTGCATGCAGCAGGACTTCTATCGCTTGAAACTGAGCAGCACAGATGCACCATACTTGATCTGTTCATTGAAATTGACAGGATACTTCGCCCAGAGGGTTGGGTTATAATTCGCGATACGCTTCCCTTGATAGAGTCAGTTAGAGCTCTAACAGCACAACTGAAGTGGGATGCAAGAGTGATAGAAATTGAAAGTGACAGTGATCAGAGACTCTTGATCTGCCAGAAACCTTTCTTTAAGAGACAGGCAAGCTAA 2082 0.4251 MSRPLQRGVSGGVRVPESGHDLWDSQSKDKTEKEDLDKRGSSDHSPFALRFPLRLILGNNSDSKYGNGIVENGFASDPFSVGTPRSRLKLMLLSLKFSLVFIVVLALTGSFWWTLSISSSSRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKESEFCSQEFENFVPCYNVSENVELGVSDVNEFDRQCGHEPRQNCLVLPPLNYKIPFRWPTGKDVIWIANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFDSQLLTMCIANYEPSGSQVQLSLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGIFLIEADRLLKPGGYFVWTSPLTNARNKENQKRWRFIQDFTLNLCWEMLSQQDETVVWKKTSKKSCYASRKTRSGPSLCGRGIDVESPYYRELQNCIGGIQSRRWVPIDKRERWPSRANLNKNELAIYGLQPDEFTEDSDSWRTAVQNYWSLLSPLIFSDHPKRPGDEDPSPPYNMFRNVLDMNAHLGGFNSALLQARKSVWVMNVVPISGPNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGLLSLETEQHRCTILDLFIEIDRILRPEGWVIIRDTLPLIESVRALTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01064 693 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 165 685 IPR004159 GO:0008168
Cca05g01064 693 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 691 IPR004159 GO:0008168
Cca05g01064 693 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 199 390 IPR029063 -
Cca05g01064 693 MobiDBLite consensus disorder prediction 1 43 - -
Cca05g01064 693 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 14 691 - -
Cca05g01064 693 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 500 655 IPR029063 -
Cca05g01064 693 MobiDBLite consensus disorder prediction 21 43 - -
Cca05g01064 693 Gene3D Vaccinia Virus protein VP39 243 424 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01064 Cca-Chr5 27418182 27424817 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01064 K23870 - gmx:100805992 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01064 05 27418182 27424817 Cca05g01064 05 27418182 27424817 ECH