Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01059 GTGATAACGAACTAGAGAAGCTCAAATTTGCTACGGAAGAAAGGGAGAAGCTTCACATAAATGAACAGTGCAGAGTTGCCAATGTTATCCAAGAGAAGGATACAATGATAAGGAATTTTGAAGAAATGTTAACATCTAGTAGATTGGCTACAGAAAATTTGAACACAAAATTGGAAGAGGTTCACCTTCAGTTGAAAGTTAAAGGAGATGAAATTATGCATCACATAACCAATCAAGAGAAATTGGAGAAAGAAAAGAGTGATCTTCAATTGTGCAATGCTGAGCTTGCCGAAAAGCTTAACATGTCACTTGAGGAAATCAAAAACCTTGAAGAGTCACTTCAATCATTGGCTGCACATTTGTCAAATGTAGACATAGAAAGCCTGAATCTTTTGAGCAAGTTTGATGAAATGAATTTGTTCTATGCTTCTTGCTTCCAGTTGCAGGAGAGAGAAACTTTCTCAAAGCATGCTCAATACCAGTATAGTGAGCTTAATAATAGATTTGTTATCTTGGAATTAGAAAAGAACGCAACTCAAATGAAAAATGATGAGTTAAGAAAAACTGTGTATGAACTTCAGAAAGTTCAAGAATCTACTGCAGCCCAGCTTACAGAGAACTCTCGATTAGCTGCTGAGAGAATTCAAAGTTTGGAGTCAGAAGCTGAAACTTTAATCTCAAAAAAGAAAGAAGCAGAGGTATTAATAACAAAATTAGAAGAGAAAGCTGAATTTCTGTTAGAAAGTTCTAGATCATCAGAGAATCAAGTGCAAGGTTTACTGCTGAAGGTTTCAGCATTAGAGACTGAAAACAAAGAAAATACAGAAAGACTGCAGGCAGAGATATTGAACAAATCAGAGGAAATAGATACTTTGCAAAAGGAGAGAATGAAACAAGATCAGCATGCTGATTCTCTTGATAAAGAAGTCATCCAGCTTCATAATGTCTTGGAGGAAAAAGACAAGTGTATTTTACATTATAAGCAACAAGAAAAGAAGCTGGAAGATCAGATCAAACAGAATCTATCATTATTGACTGCTGCTGAAAGCAAACTTTCAGAAGCTAGAAAGCAATATGATCAAATGGTAGAGAACAAACAGTTAGAATTATCAAGGCATTTGAAAGAAATATCTCAGAGAAACGATCAGGCTATTAATGACATTAAGAGGAAGTATGAATTGGAGAAGATGGAAATTGTGAACATGGAAAAAGACAAGGCTGACAGAGCTATTGCAGAAATTGAGGGAGGGTGTGACCAAAAACTTGCAGAATGCAAAGAAGAATCAAGGCAGAAATTGATGCACATTCAGGAGGAACACACGTTGCTGGTTACTCAAATGCAGCAGGAGCATGACAAGAGGCAACTAAGCCTCATAGCTGAACACAATGAACAGCTAAAGCGTACCCAACTGCAAGCTGAAAATGAACTGAGAGAGAAAACAATGTTTCTGAGGAATGATCACGAAGCTCAGATTAAAGCATTGAGGTGTGAACTTGAAGATGAGTGTCAGAAGCTGGAAGAGGAGTTACATCTTCAAAAATCTAAAGAAGACAGACAAAGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCCAAAGAGGACCAAGAAGTGAATTCAAAACAGGATTACTCCATTTCATCAATTAAGAGAAGAAGTTCTTGTGGTGGGAAAAGAAATCAGCATGATCTTGATTCTCCTTACTTTGAAGCAACACAAACACCAGTGCCAAAGTTGTTGAAGAAAGTGGAGAACGTAAAAACAGGAAGTGCAGTGGGCATTCCTAAGCATCATAGAAAGGTAACTCGTCACGAGTATGAAGTTGAAACTTCTAATGGAAGAACAATCACAAAGAAAAGAAAAACAAGAAGTACTGTCATGTTTGAGGACCCTAGAAATCGAAAGATAAATACACCGAAAGTAAATACTCCTGGAAGTGTTGTTAAGAAGGGTCTCTTAATCCATATGCAGATGATCCCTATGCATTTGATTAAAGTCGAAGTTAATGGGTCTGAAAATGAACTGAAGATTGAAAGCCTCAAGCTGGAAGACATTTTATTTCTTCTGCCTCTGACCAAGCACTCTTCTTTCTCCTTCCGAGCCACCGCATCAGCTAAGGAGCCACCGCACCAGCCACTATACTCTCTACTTTCTCCTTCCGAGCGACTGGAAGGTTTAGGTTTAAGTGAAGAAGATGGGTCTGAATCGGGATGGGTGGCTGCTAGAACTTCCTGCGACCACCTGGGCGCATTATCCGACGATCTGAGTCACATTCCGACCCCTGACACTCACTACAACACGTGCTCAACTCATTCCCCAACTGCGTCCTGTTTATCAACATCACCTTCCATCTGCAACTTCATTCTAGGATTTAGCTTCATAGTTAGGAGAGTTCTGTTTCCTCTGTCTCAAGGCAAAGTTCTCAGATTGCTAAACATGTGA 2450 0.3898 DNELEKLKFATEEREKLHINEQCRVANVIQEKDTMIRNFEEMLTSSRLATENLNTKLEEVHLQLKVKGDEIMHHITNQEKLEKEKSDLQLCNAELAEKLNMSLEEIKNLEESLQSLAAHLSNVDIESLNLLSKFDEMNLFYASCFQLQERETFSKHAQYQYSELNNRFVILELEKNATQMKNDELRKTVYELQKVQESTAAQLTENSRLAAERIQSLESEAETLISKKKEAEVLITKLEEKAEFLLESSRSSENQVQGLLLKVSALETENKENTERLQAEILNKSEEIDTLQKERMKQDQHADSLDKEVIQLHNVLEEKDKCILHYKQQEKKLEDQIKQNLSLLTAAESKLSEARKQYDQMVENKQLELSRHLKEISQRNDQAINDIKRKYELEKMEIVNMEKDKADRAIAEIEGGCDQKLAECKEESRQKLMHIQEEHTLLVTQMQQEHDKRQLSLIAEHNEQLKRTQLQAENELREKTMFLRNDHEAQIKALRCELEDECQKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQDYSISSIKRRSSCGGKRNQHDLDSPYFEATQTPVPKLLKKVENVKTGSAVGIPKHHRKVTRHEYEVETSNGRTITKKRKTRSTVMFEDPRNRKINTPKVNTPGSVVKKGLLIHMQMIPMHLIKVEVNGSENELKIESLKLEDILFLLPLTKHSSFSFRATASAKEPPHQPLYSLLSPSERLEGLGLSEEDGSESGWVAARTSCDHLGALSDDLSHIPTPDTHYNTCSTHSPTASCLSTSPSICNFILGFSFIVRRVLFPLSQGKVLRLLNM 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01059 815 Coils Coil 78 126 - -
Cca05g01059 815 Coils Coil 484 504 - -
Cca05g01059 815 Coils Coil 274 308 - -
Cca05g01059 815 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 1 652 - -
Cca05g01059 815 Coils Coil 458 478 - -
Cca05g01059 815 Coils Coil 384 404 - -
Cca05g01059 815 Coils Coil 200 255 - -
Cca05g01059 815 Coils Coil 344 364 - -
Cca05g01059 815 PANTHER SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED 1 652 - -
Cca05g01059 815 MobiDBLite consensus disorder prediction 532 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01059 Cca-Chr5 27353459 27369808 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01059 - - gmx:100788684 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01059 05 27353459 27369808 Cca05g01059 05 27353459 27369808 ECH