Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01056 ATGGCCGTTGATGCTTCAGCCAACGCCTTCAACGGCAACATAACACTCTCCGTTCTCGTCACTTGCATCGTTGCTGCTTCCAGTGGACTCATTTTTGGATATGACATCGGAATTACAGGAGGTGTCACTACGATGAAACCATTTCTTGAAAAATTCTTCCCATCCATATTGAGAAAGTCCGCTAGAGCTGAAACAAACGTGTATTGCGTCTACGACAATCAGTTGTTAACGTTATTTACGTCCTCCCTTCATCTGGCGGGACTAGTTTCGTCTCTCTTGGCCGGCCGGGTCACGACGGCGTTGGGTCGGAAAAACACCATGATCTTCGGTGGCTGTACCTTTTTCGCCGGCGCTGCCATTAACGGTGGTGCTGAAAATATTGCTATGCTCATCTTGGGTCGTATCTTGCTCGGCTTCGGAGTGGGTTTCACTAATCAAGCAACACCGGTGTATCTTTCGGAGATGGCTCCTCCGAAATGGCGAGGCGCGTTCAACACGGGGTTCCAATTCTTCATCGGAATGGGCGTGGTGGCCGCGAACTGCATAAACTACGGCACGGCGAGGGTGGCGTGGGGGTGGCGGCTCTCCCTGGGCCTGGCGACAGTCCCCGCAATGATCATGACAATCGGAGCGACCCTGATCCCCGACACACCGAGCAGCCTAGTCGAGCGGGGCCACGTAGAGCAAGCGCGAAACGCGTTGCGCAAAGTGAGGGGAGCCACCGTGGACGTGGACGCCGAACTGGAACAGCTGATTCAGTCGTGGAATGCTTCCAAGGCCGTGAAGGAGCAGGAGAGGTTGGTGAGCATATTCGAGAAGGAGTATCGGCCTCAGTTGGTGATGGCCTTTGCTATTCCCTTGTCTCAGCAGCTTACAGGGATCAACATTGTCGCTTTCTATGCGCCTAACCTCTTTCAGTCTGTAGGATTTGGCAATCACTCCGCTTTGCTTTCGGCGGTTATACTTGGACTCGTTAATCTTGCTTCCATACTTGTCTCAACCGCTGTTGTTGATCGCTTTGGTCGGAGATTCTTGTTCATTGTGGGTGGCCTTCAGATGCTTCTCTGCATGCTTGGGGTGGCTGTTGTGTTGGCAGTGGTGAGTGGTGTTCATGGTACAGAGCACATGTCAAAGGGCAATGCCATATTGGTGCTGGTGCTGTTGTGTTTGTACGCCGCAGGTTTTGGTTGGTCGTGGGGTCCTCTCTGCTGGCTAATTCCGAGTGAGATTTTCCCCTTAAAGATCAGATCCACTGGACAAAGCATAGCCGTGGCTGTGCAGTTCTTAACCGTGTTTATTCTATCCCAGACATTCTTGACAATGCTATGCCACTTTAAGTTTGGGGCTTTCCTCTTCTATGCTTGTTGGATTGCACTCATCACCGTCTTTGTTATACTATTCTTGCCCGAGACTAAAGGAATTCCTTTGGATTCAATGTACAACATATGGGGCAAACACTGGTTTTGGCGCCGGTTTGTTGTTAAAGGACAGGTTAACCAAGATATATAG 1509 0.5089 MAVDASANAFNGNITLSVLVTCIVAASSGLIFGYDIGITGGVTTMKPFLEKFFPSILRKSARAETNVYCVYDNQLLTLFTSSLHLAGLVSSLLAGRVTTALGRKNTMIFGGCTFFAGAAINGGAENIAMLILGRILLGFGVGFTNQATPVYLSEMAPPKWRGAFNTGFQFFIGMGVVAANCINYGTARVAWGWRLSLGLATVPAMIMTIGATLIPDTPSSLVERGHVEQARNALRKVRGATVDVDAELEQLIQSWNASKAVKEQERLVSIFEKEYRPQLVMAFAIPLSQQLTGINIVAFYAPNLFQSVGFGNHSALLSAVILGLVNLASILVSTAVVDRFGRRFLFIVGGLQMLLCMLGVAVVLAVVSGVHGTEHMSKGNAILVLVLLCLYAAGFGWSWGPLCWLIPSEIFPLKIRSTGQSIAVAVQFLTVFILSQTFLTMLCHFKFGAFLFYACWIALITVFVILFLPETKGIPLDSMYNIWGKHWFWRRFVVKGQVNQDI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01056 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 472 IPR020846 GO:0022857
Cca05g01056 502 Pfam Sugar (and other) transporter 22 483 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca05g01056 502 PRINTS Sugar transporter signature 29 39 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 PRINTS Sugar transporter signature 131 150 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 PRINTS Sugar transporter signature 385 406 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 PRINTS Sugar transporter signature 408 420 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 2 496 IPR045262 GO:0015144
Cca05g01056 502 CDD MFS_STP 24 470 IPR044778 GO:0015145|GO:0015749
Cca05g01056 502 SUPERFAMILY MFS general substrate transporter 23 477 IPR036259 -
Cca05g01056 502 ProSitePatterns Sugar transport proteins signature 2. 136 161 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca05g01056 502 TIGRFAM SP: MFS transporter, sugar porter (SP) family 15 477 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca05g01056 502 Gene3D MFS general substrate transporter like domains 11 486 IPR036259 -
Cca05g01056 502 PANTHER SUGAR TRANSPORTER 2 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01056 Cca-Chr5 27305437 27309328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01056 45 492 Organic Solute Cotransporters AT1G34580 64.444 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01056 K24193 - gmx:100783916 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01056 05 27305437 27309328 Cca05g01056 05 27305437 27309328 ECH