Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01050 ATGCCTAAGAATGCAGAGTTGAACTCTGTGACTAATTCTCACACCAATGCAAGCAAAGGCTTGATGGGGAATATCATGAGGAGGAACAGCATCAGCAATGAGGTTGCACAGTTTTTGAGTCCTAGGATGAACAAAATGGACCCTGAGATGTTGAAGTCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCTTTGGTTTTGTATGATCGAGCCATTGCACGTGATTCAAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGAAGGCTTCAGGAAGCAATTATTGAGTGTGAGGAATCTATCAAGCTGGACCCTTCTTATGTCAGAGCCCACAACCGTTTGGCCACAATATATTTCAGGTTGGGAGAGGTAGAAAAAGCACTGGATTGCAATGAGTCAGCCTTATATGCTGATTCAGTACTTGCTTTCCAAGCTCAGGCTCTTAAAAATCACCTTAACAAATGCATAGAAGCACGGAAAGTCAATGCATGGAGTGTTATACTAAAGGAAACAAAGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGTTGAAGCTCCTAAGATACCAAGAGGCATATGTCATCTACGATAAAATGCCAAAATTTTCACTTGATTGGTGTACCAAGATATTTGGCCCGGTTCACAGCGCTTACCTTTTAATGATAAGTGCACAGGTTCACTTAGCTGCTGGCAGGTTTGAGGAAGCTGTGACAGAAGCTCAGCAAGCAGCTAAAGTTGATCCTGGCAATAGAGAGGTGAATGCAGTGGTAAGGAAGGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTGCTCTTTAAGGCATCAAAATTCACCGAAGCATGTGCCGTGTACAACGAAGGACTAGAACATGATCCACACAACTCAGTTCTTCTGTGTAACAGAGCTGCATGTCGTTCTAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAATGCGGCACTCATGGTTCAACCATGTTATAGCAAAGCAAGGTTAAGGAGGGCACATTGCAATGCCAAGTTGGAAAGGTTGGAAGCAGCTATTCAAGACTATGAAATGCTATTAAGGGAAAGGCCAGGGGATGAGGAAGTGGCAAGGGCATTGTTTGAAGCTCAGATCCAACTCAAGATTCTACGTGGTGAAGATACTAAGGACTTGAAATTTGGTTCAAATTTGGTTTTCATCTCAAGTAATGATCGGTTCAGACATTATGTGACCTCACCTGGGATGGCTGTGGTGCTCTTTAGCAACAAGGCAACCCACAAGAAAGTGTTACTTGAGTTGGAGCAAATCAGCAAGAGATTCCCATCACTTAACTTCCTCAAGGTGGAGATCGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGAGCTCTATCCCAGCTTTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAATTTCAGGCAACAACCACGACTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 1542 0.4293 MPKNAELNSVTNSHTNASKGLMGNIMRRNSISNEVAQFLSPRMNKMDPEMLKSMGNEAYKQGRFEEALVLYDRAIARDSNKATYHCNKSAALIGLGRLQEAIIECEESIKLDPSYVRAHNRLATIYFRLGEVEKALDCNESALYADSVLAFQAQALKNHLNKCIEARKVNAWSVILKETKSAISLGADSAPQVYALQTEALLKLLRYQEAYVIYDKMPKFSLDWCTKIFGPVHSAYLLMISAQVHLAAGRFEEAVTEAQQAAKVDPGNREVNAVVRKARAATSARMSGNLLFKASKFTEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMVQPCYSKARLRRAHCNAKLERLEAAIQDYEMLLRERPGDEEVARALFEAQIQLKILRGEDTKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKKVLLELEQISKRFPSLNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNHDLLERSVKLYSS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01050 513 Pfam Tetratricopeptide repeat 118 143 IPR019734 GO:0005515
Cca05g01050 513 Pfam TPR repeat 55 90 - -
Cca05g01050 513 SUPERFAMILY Thioredoxin-like 404 505 IPR036249 -
Cca05g01050 513 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 4 512 - -
Cca05g01050 513 Pfam Tetratricopeptide repeat 317 346 IPR001440 GO:0005515
Cca05g01050 513 ProSiteProfiles TPR repeat profile. 235 268 IPR019734 GO:0005515
Cca05g01050 513 Pfam Thioredoxin 442 505 IPR013766 -
Cca05g01050 513 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Cca05g01050 513 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 512 IPR044534 -
Cca05g01050 513 Coils Coil 348 375 - -
Cca05g01050 513 Pfam Tetratricopeptide repeat 242 314 - -
Cca05g01050 513 Gene3D Tetratricopeptide repeat domain 46 400 IPR011990 GO:0005515
Cca05g01050 513 CDD TRX_family 422 500 - -
Cca05g01050 513 SUPERFAMILY TPR-like 284 397 IPR011990 GO:0005515
Cca05g01050 513 SUPERFAMILY TPR-like 48 270 IPR011990 GO:0005515
Cca05g01050 513 SMART tpr_5 235 268 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 281 314 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 82 115 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 349 382 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 48 81 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 116 149 IPR019734 GO:0005515
Cca05g01050 513 SMART tpr_5 315 348 IPR019734 GO:0005515
Cca05g01050 513 Gene3D Glutaredoxin 407 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01050 Cca-Chr5 27223637 27227571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01050 280 414 Calmodulin-binding Proteins AT5G48570 29.221 2.43e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01050 K09527 - gmx:100791862 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01050 05 27223637 27227571 Cca05g01050 05 27223637 27227571 ECH
Cca05g01050 05 27223637 27227571 Cca03g01223 03 29070010 29073705 PCT