Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01223 ATGGCAGCGAAAGCCAAGAACAAGGTTCAGATTGAACTGGGATGCGGTTTGTTGGGGAGAATTTTCCATCTCAAAACCAATAACAGGCCTAGAAAATCCTCTGTCCATTCACTACCCGTGAAGGCTTGCAACACTGCACAACAGAGGGATCAGGCTAAAGCAGAATCCAAAACCCCCCCAAACCATGAATCAAAGGTTCCAAGAGATAGCACCACATCGAGAAAAACTACCTCTAGTAACCGTGCACCTTCTGCACACAGAAACACTCCAAATGGGAGACCCTCTGATGCTGCAAGAACCTCAATTCAACAAAGCCATGACTCAAATGATGAGAGTAAACAACAGAAAGAGCAGGCTCTGGAGCTTGCTAGGATAAATACAGGCACCAATCAGCAGCAGTACAACGAGACCAAATCCCCAGCCAAAGAATTTGTGTTGCCAATCACTGGGAATTTGCTTGTGAATAGCAGCCCAAGAACTAGTGTTACCAAGAGCAAAGAGTTGAACTTTATGTCCAGTTCCTGTTCTTACAACAACAAAGGCGTAATGGGGAATATCATGAGGAAGAACAGTGATGAGGTTACGCAGTTTCGGAGTCCAAGGAACAACAGAGTGGACCCTGAGGTGTTGAAGTCCATGGGGAATGAAGCCTACAAGCAGGGAAGATTCGAAGAGGCTTTGGCTTTGTATGATAGAGCCATTGCTCTTGACTCTAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCTTTGATAGGCTTGGGAAGGTTTCTGCAGGCAATTGTAGAGTGTGAGGAAGCTATACGATTGGAGCCTTCCTATGAAAGAGCCCACACCCGTTTGGCAACAATTTATTTAAGGTTGGGAGAAACAGAGAAGGCACTGAATTGCAATGAAACAACTCCATATGTTGATTCCGTACTCGCTTTCCAAACTCAGGCTCTTGGAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGACTGGAAAACTGTATTAAAGGAAACACAGGCTGCAATATCCTTAGGCGCTGATTCAGCTCCACTGGTGTATTCTTTACAAACTGAAGCCTTGCTAAAGCTCCTAAGACATCAAGAGGCATATGCTACCTACGAGAAAATGCCAAAATTTGACCTTAATTGTTGTAACAAATTATTTGGCCCGGCTCGTAGCGCTTACCTATTGATGATAGGCGCACAAATTTACTTGGCAGCTGGCAGGTTTGAGGAAGCTGTGACATCGTCTCAACAAGCAGCTAAACTTGATCCAAGCAACAGTGAGGTAAATGCAGTGGTGAGAAGGGCCAGAGCAGTTGCATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCGTGCGCTGTGTATAATGAAGGACTAGAGCATGATCCTTACAACTCAGTTCTGCTATGCAATAGGGCAGCGTGTCGTTCTAAGCTTGGTCAATTCGAGAAAGCAATCGAAGATTGTAATGTAGCACTTTTAGTTCAGCCTAGTTATAGCAAGGCAAGGCTGCGGAGGGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGTTGCCATTCAAGACTATGAAATGTTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGGGCTCTGTTTGAGACCCAGCTCCAACTCAAGATGCTACGCGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGGTTTTAATTTCGAGCAATGATCGGTTTAGGCATTATGTAACATCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACACACAAGCAAGTGTTATTGGTGTTGGAGCAAACCTGCAAAAGATTTCCATCGGTTAATTTCCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCGAAATCAGAAGGTGTGAACTCCATCCCAGCCTTCAAAATATACAAGAATGGATCAAGGGTTAAGGAAATTCCAGGCAACAACCACGACTTGTTAGAAAAATTAGTTAAATTATATATCAGATGA 2019 0.4413 MAAKAKNKVQIELGCGLLGRIFHLKTNNRPRKSSVHSLPVKACNTAQQRDQAKAESKTPPNHESKVPRDSTTSRKTTSSNRAPSAHRNTPNGRPSDAARTSIQQSHDSNDESKQQKEQALELARINTGTNQQQYNETKSPAKEFVLPITGNLLVNSSPRTSVTKSKELNFMSSSCSYNNKGVMGNIMRKNSDEVTQFRSPRNNRVDPEVLKSMGNEAYKQGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRFLQAIVECEEAIRLEPSYERAHTRLATIYLRLGETEKALNCNETTPYVDSVLAFQTQALGNHLSKCTEARKVKDWKTVLKETQAAISLGADSAPLVYSLQTEALLKLLRHQEAYATYEKMPKFDLNCCNKLFGPARSAYLLMIGAQIYLAAGRFEEAVTSSQQAAKLDPSNSEVNAVVRRARAVASARMSGNLLFKASKFMEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALLVQPSYSKARLRRADCNAKLERWEVAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLVLISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNSIPAFKIYKNGSRVKEIPGNNHDLLEKLVKLYIR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01223 672 MobiDBLite consensus disorder prediction 31 54 - -
Cca03g01223 672 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 670 - -
Cca03g01223 672 Pfam Tetratricopeptide repeat 395 427 IPR019734 GO:0005515
Cca03g01223 672 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 394 427 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 440 473 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 508 541 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 207 240 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 474 507 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 241 274 IPR019734 GO:0005515
Cca03g01223 672 SMART tpr_5 275 308 IPR019734 GO:0005515
Cca03g01223 672 ProSiteProfiles TPR repeat profile. 394 427 IPR019734 GO:0005515
Cca03g01223 672 Gene3D Tetratricopeptide repeat domain 205 559 IPR011990 GO:0005515
Cca03g01223 672 Gene3D Glutaredoxin 567 671 - -
Cca03g01223 672 CDD TRX_family 581 668 - -
Cca03g01223 672 SUPERFAMILY TPR-like 445 556 IPR011990 GO:0005515
Cca03g01223 672 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 670 IPR044534 -
Cca03g01223 672 SUPERFAMILY Thioredoxin-like 560 669 IPR036249 -
Cca03g01223 672 MobiDBLite consensus disorder prediction 29 118 - -
Cca03g01223 672 Pfam Thioredoxin 602 666 IPR013766 -
Cca03g01223 672 MobiDBLite consensus disorder prediction 71 108 - -
Cca03g01223 672 MobiDBLite consensus disorder prediction 55 70 - -
Cca03g01223 672 Pfam Tetratricopeptide repeat 463 495 - -
Cca03g01223 672 SUPERFAMILY TPR-like 207 429 IPR011990 GO:0005515
Cca03g01223 672 Pfam TPR repeat 214 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01223 Cca-Chr3 29070010 29073705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01223 K09527 - gmx:100814381 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01223 03 29070010 29073705 Cca03g01223 03 29070010 29073705 ECH
Cca05g01050 05 27223637 27227571 Cca03g01223 03 29070010 29073705 PCT