Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01040 ATGCATGTTATGATGAGGAACTGTGTCAACCTCAAAATATGGCTTCTTAACTTGGTTACCTTGTTTAGTATACTTTCCTTGTCCCACGGAAGACTAAAACATGATGGGTTTCGAGTGAGAGCAGTTAATCTAGGTGGTTGGCTCGTTACTGAGGGTTGGATGAAACCTTCTCTTTTCGATGGCATTCCAAATAAAGACTTCTTGGATGGAACTGGACTTCAGTTCAAGTCGGTGACAACACGAAAATATCTCTGTGCGGAGTCTGGAGGAGGAACCATCATAGTTGCAAATCGCACAGCTGCTTCGGGTTGGGAAACATTTTCATTGTGGAGGCTGAACAAGGACACTTTCAGATTCAGGGTGTTCAACAAACAGTTCGTGGGGTTAGATGGGATTAACGTTGTTGCTGTGTCTAACATTTCCACTGATTCTTTGACGTTTCATGTTGTGAAGGAAAGTGGTAATTCCAGCCGTGTTCGAATCAAAGCTTCCAATGGATACTTCTTGCAGGCGAAGACAGAGGATCTGGTGACTGCTGATGTTTCAGAGGTCAAAGGATGGGGAGATGATGATCCATCTGTTTTTGTAATGACAATTGGTGGAAGGATGCAAGGGGAATTTCAAGTAACAAATGGATATGGACCCTCAAAAGCTCCCCAAGTTATGAAGGAACATTGGAGCACTTTTATTGTTGAAGATGATTTCAAGTTCATAGCTAGTAATGGACTGAATGCTGTTAGAATTCCAATTGGCTGGTGGATAGCAAGTGATCCTACTCCTCCCCCACCATATGTTGGGGGTTCCTTGAATGCACTAGACAAAGCTTTTTTGTGGGCACAGAAATATGGATTGAAAATCATCCTTGATCTTCATGCTGCACCTGGTTCCCAAAATGGTTTTGAACACAGTTCTTCAAGAGATGGTTCACAAGAATGGGGAAAAACAGATGAAAACATTCAACAAACAGTTCAAGTTATAGATTTCCTGACCGCAAGGTATGCAAAAAGTCCAAGCCTTTATGCAGTTGAGCTAATAAATGAGCCTCTCTCACCTGGTGTGACACTAGAGAGCTTGAGCAAGTACTATAAGGCTGGTTATGAAGCAGTGCGCAGGCACTCTTCCACAGCCTATGTGGTGTTATCAAATAGGCTAGGACCCTCAAATCCTAGGGAACTCTTCCCTCTTGCAAATGGCTTTACGAGATCTGTGATTGATGTTCACTACTACAACCTCTTTCAAGATGTTTTTAATGACATGAATGTCCAACAGAACATTGATTTCATCAACAACAACCGCTCATCACAGTTGAGTTTTGTTACAACCTCAAATGGCCCTCTTACTTTTGTTGGCGAATGGGTTGCTGAATGGCAAGTAAAAGGAGCTACAAAAGAAGATTATCAAAGATTCGCTAGGGCCCAACTAGACGTTTTTGGACGAGCAACATTTGGGTGGGCTTATTGGGCTTTCAAAAACGTCAACAATCATTGGAGTTTGGAGTGGATGATCAAAAATGGTTATATCAATCTGTAG 1530 0.4216 MHVMMRNCVNLKIWLLNLVTLFSILSLSHGRLKHDGFRVRAVNLGGWLVTEGWMKPSLFDGIPNKDFLDGTGLQFKSVTTRKYLCAESGGGTIIVANRTAASGWETFSLWRLNKDTFRFRVFNKQFVGLDGINVVAVSNISTDSLTFHVVKESGNSSRVRIKASNGYFLQAKTEDLVTADVSEVKGWGDDDPSVFVMTIGGRMQGEFQVTNGYGPSKAPQVMKEHWSTFIVEDDFKFIASNGLNAVRIPIGWWIASDPTPPPPYVGGSLNALDKAFLWAQKYGLKIILDLHAAPGSQNGFEHSSSRDGSQEWGKTDENIQQTVQVIDFLTARYAKSPSLYAVELINEPLSPGVTLESLSKYYKAGYEAVRRHSSTAYVVLSNRLGPSNPRELFPLANGFTRSVIDVHYYNLFQDVFNDMNVQQNIDFINNNRSSQLSFVTTSNGPLTFVGEWVAEWQVKGATKEDYQRFARAQLDVFGRATFGWAYWAFKNVNNHWSLEWMIKNGYINL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01040 509 Gene3D Glycosidases 195 509 - -
Cca05g01040 509 Pfam Cellulase (glycosyl hydrolase family 5) 222 491 IPR001547 GO:0004553|GO:0071704
Cca05g01040 509 Gene3D - 75 194 - -
Cca05g01040 509 SUPERFAMILY Actin-crosslinking proteins 73 186 IPR008999 -
Cca05g01040 509 PANTHER FASCIN 10 508 IPR010431 GO:0007015|GO:0051015
Cca05g01040 509 PANTHER PUTATIVE-RELATED 10 508 - -
Cca05g01040 509 SUPERFAMILY (Trans)glycosidases 38 508 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01040 Cca-Chr5 27021251 27025405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01040 - - gmx:100790619 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01040 05 27021251 27025405 Cca05g01040 05 27021251 27025405 ECH