Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01026 ATGTCATCCGCCTGTGTTGAAGAATGTCCAAGGCTTATCCCTAATCTCCCTGATGAGTTATCCATTCTGATTATTGCTAGACTTCCTAGAATTTGTTACTACCATGTAAGGCTGGTATCTAGGAGGTGGAAAGCAACTATCATGAGTTCAGAATTATATAAAGTAAGAAAAGAACTTGGAACAACTGAAGAGTGGTTATATCTGTTGGTTAGGGTTGGAGAAAATAAGCTCTTATGGCATGCTCTAGACCCCCGATCTCGAATATGGCAGAGGCTACCTATTATGCCCAGCGTTGTTGAAGAAGAGGAACCCCAAAAGGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTGGATTCTCAAAAGCTTCAACTATGAAATGTGTCTGGCGATTTGATCCGATACAAAATTTGTGGCAGAAGGTGAATTCTATGTCTACAGCTACATGGTCCCAAGTTCCTAGCATGCCATTCTCAAGAGCTGGAGTCCTTCCCACAGCTTTTTTGGCCGACATGTTAAAGCCTATTGCAACCGGGTTAACCTCATACAAGGGAAGGTTGTATGTTCCCCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCTGAAACAAATTCATGGATGGAAATGCCAACTGGAATGGGTGAAGGGTGGCCCATAAAGCAGGCTGGAACAAAATTGAGTGTTGTGGTGGATGGTGAATTGTATGCTTTTGATCCTTCTAATTCTGTGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAGGATGCATGGAAAGTTGTTATTGGAAAAGTCCCTGTGTATGATTTTACAGATTCGGAGTCTCCATATCTATTAGCAGGTTTCCATGGAAAGCTTCATTTCATCACAAAAGATGCCAATCATGATATTGCTGTTATGCAGGCTGATCTGAGCAGTAATTTGGATTCTTCACCATCAACCTCAACACATCTATCACCCAAATCTTATTATGATGGATTACTTCCAGAATCGGCCGCTGAATCTGATGCAGTTGTTTGGAAAGTAGTTGCCAGCAGAGGTTTTGGGCAGGCTGAACTGATCAATTGCCAGTTGCTAGCGCTATCCCCAACTAATGTGGAGCAAGTTGAAATAGGCATTTATCTACAAATTCGTGGGCATATGATAAAATATGTTCCTTCTCAGTAA 1194 0.4179 MSSACVEECPRLIPNLPDELSILIIARLPRICYYHVRLVSRRWKATIMSSELYKVRKELGTTEEWLYLLVRVGENKLLWHALDPRSRIWQRLPIMPSVVEEEEPQKGSSRLWMWNMVEGGFSKASTMKCVWRFDPIQNLWQKVNSMSTATWSQVPSMPFSRAGVLPTAFLADMLKPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWMEMPTGMGEGWPIKQAGTKLSVVVDGELYAFDPSNSVDSGRIKVYDQGEDAWKVVIGKVPVYDFTDSESPYLLAGFHGKLHFITKDANHDIAVMQADLSSNLDSSPSTSTHLSPKSYYDGLLPESAAESDAVVWKVVASRGFGQAELINCQLLALSPTNVEQVEIGIYLQIRGHMIKYVPSQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01026 397 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 148 368 - -
Cca05g01026 397 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 1 106 - -
Cca05g01026 397 Gene3D - 73 272 IPR015915 GO:0005515
Cca05g01026 397 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 117 148 - -
Cca05g01026 397 Pfam Kelch motif 119 147 IPR006652 GO:0005515
Cca05g01026 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 148 368 - -
Cca05g01026 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 106 - -
Cca05g01026 397 ProSiteProfiles F-box domain profile. 10 56 IPR001810 GO:0005515
Cca05g01026 397 SMART fbox_2 16 56 IPR001810 GO:0005515
Cca05g01026 397 SUPERFAMILY F-box domain 12 55 IPR036047 GO:0005515
Cca05g01026 397 Pfam F-box-like 13 54 IPR001810 GO:0005515
Cca05g01026 397 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 117 148 - -
Cca05g01026 397 SUPERFAMILY Kelch motif 67 276 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01026 Cca-Chr5 26747994 26749930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01026 16 220 Miscellaneous Gene Families AT4G33900 27.189 2.46e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01026 - - gmx:100815614 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01026 05 26747994 26749930 Cca05g01026 05 26747994 26749930 ECH