Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01022 ATGCCTTATCAACTGTCATCTTGTGTGTTCATACCCCGTGCAATATCGGTTCATCCTAATACAAATCACAGCAGTTCCAAGTCTGACAGAGCTCGGAGAGTTGATTATCTCACAAAAATCCCTCGGAGTGTTAACATGGAGAGCCTGCAGAGTGGTTATTTGTTTCCAGAGATATTCATGCGAGAGTCTGAATATGCTCAGAGGAATCCACATGCAAGATTGATAAGACTTGGAATTGGTGATACTACCGAGCCAATACCAGACATCATAACTTCAGCTATGGTTGAGCAAGCATTGGCTCTGTCAACAGCTAAAGGCTATAAGGGTTATGGACCTGAGCAAGGCAACGGGGAACTAAAGAGGGCAATAGCTGAAACATTTTACCAAGATATGCAAGTGAAGGAAAATGAGATTTTTGTATCTGATGGTGCACAGTGTGATATTTCTCGCGTTCAGATGCTTCTGGACGCTAGTTTGTCAATAGCTGTGCAGGATCCAACTTTTCCGGCATACATAGATTCGAGTGTGATTGTTGGTAGGGCTGGGAGGTTCAAAGCAGAGAATGGGAAGTACAAAAATATTGTGTACATGAAGTGTGGACCTGAGAATAATTTCTTTCCAGACCTATCAACTACTCCAAGAACGGATATCATTTTCTTTTGTTCTCCAAATAATCCAACTGGTAGTGCTGCATCTCGACAGCAATTGGAGCAACTTGTGAAATTTGCAAAAGCAAATGGGTCTATCATCATTTATGACGCTGCTTATGCTGCTTACATTTCAGATGAAAGTCCAAGATCAATTTTTGAAATTCCTGGAGCCAAAGAGGTGGCAATTGAAATTTCATCATTTTCCAAATTTGCTGGTTTTACTGGTGTACGCCTTGGGTGGACAGTTGTTCCTGAAGATTTGTTGTATTCCAGTGGTTATCCTATGATAAAGGATTATGATCGCATTGTTTGCACCTGCTTCAATGGTGCATCTAATATTGTTCAAGCTGGTGGACTTGCATGCCTTTCTCCACAAGGATTTCAGGCACTGAAAAGAACGATGAGGTACTACATGGAAAATGCGAAAATACTAGTTGACACGTTTGAGTCAGTGGGTCTAAAGGTGTATGGCGGCAAAAACGGACCCTATGTGTGGGTCCATTTTCCAGGGTTGAGTTCATGGGATATGTTCAACCATATTCTAGAGAGAGCAGCCATAGTCACTGTCCCTGGCATAGGATTTGGTCCTGGCGGCGAAGGCTATATTAGAGTCAGTGCCTTTGGTCACAGAGAAACTGTGTTGGAAGCTTCAACCAGATTGACTAAATTAATTTAG 1326 0.4216 MPYQLSSCVFIPRAISVHPNTNHSSSKSDRARRVDYLTKIPRSVNMESLQSGYLFPEIFMRESEYAQRNPHARLIRLGIGDTTEPIPDIITSAMVEQALALSTAKGYKGYGPEQGNGELKRAIAETFYQDMQVKENEIFVSDGAQCDISRVQMLLDASLSIAVQDPTFPAYIDSSVIVGRAGRFKAENGKYKNIVYMKCGPENNFFPDLSTTPRTDIIFFCSPNNPTGSAASRQQLEQLVKFAKANGSIIIYDAAYAAYISDESPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPEDLLYSSGYPMIKDYDRIVCTCFNGASNIVQAGGLACLSPQGFQALKRTMRYYMENAKILVDTFESVGLKVYGGKNGPYVWVHFPGLSSWDMFNHILERAAIVTVPGIGFGPGGEGYIRVSAFGHRETVLEASTRLTKLI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01022 441 SUPERFAMILY PLP-dependent transferases 53 437 IPR015424 -
Cca05g01022 441 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 43 439 IPR019942 GO:0008483
Cca05g01022 441 Gene3D - 84 341 IPR015421 GO:0003824
Cca05g01022 441 Pfam Aminotransferase class I and II 75 433 IPR004839 GO:0009058|GO:0030170
Cca05g01022 441 PANTHER AMINOTRANSFERASE 14 440 IPR019942 GO:0008483
Cca05g01022 441 CDD AAT_like 75 437 - -
Cca05g01022 441 Hamap LL-diaminopimelate aminotransferase [dapL]. 41 440 IPR019942 GO:0008483
Cca05g01022 441 Gene3D Aspartate Aminotransferase, domain 1 54 437 IPR015422 GO:0003824
Cca05g01022 441 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 14 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01022 Cca-Chr5 26697720 26703228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01022 K10206 - qsu:112023739 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01022 05 26697720 26703228 Cca05g01022 05 26697720 26703228 ECH