Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01003 ATGCATCCCTTCTGCTGCGTCTCCGCCGTCTCCGACCACTCCTCCCCCTTCGCCATGCCGCCTCTCCCGCCCGCCGCCGCCGCCGCCAGATCCGACTCCGCTCCCCGACACGGCCAACTCCAGCACTGCATCGCCAACGGCAGCCTCCCGCCGGCGCCGGCCGCGGTGGACGTGAGGATCAACGACCTCGTGGGGAACGGAATCTCCGGGATTCTGCACAAGTGGGTGAACTACGGGAAGGGGTGGAGGCCGCGCTGGTTCGTGCTCCAAGACGGCGTTCTCTCCTACTACAAAATCCACGGACCCGATAAGATCGTCGTGAACTCCGAAACCGAGAAAGGATCCAAGGTCATTGGCGAGGAATCCGTGCGCATCATTTCGCGCAACCGGAATTCCAGCCACGTCAACCATCGCCGGAACCCTGTCGGCGAAATCCATCTCAAGGTTTCGACAATTCGTGAGAGCAGATCGGATGACAAGCGGTTTTCTGTTTTCACTGGGACTAAGAGACTTCACTTGAGGGTTGAGGCTCGCGAGGATCGAGTGGCGTGGATGGAGGCCTTGCAGGCTGTGAAAGATATGTTTCCTCGGATTTCCAACAGCGAGCTGATGGCACCGGTGGACAATGTGGCTGTTTCGACTGACAAACTGAGGCATCGGCTTATGGAGGAGGGTGTTAGTGAGGCAGCCATTCAAGACAGTGAGCAAATTATGAGAAATGAGTATGCTGCACTGCAGAACCAGCTTCTGCTGCTTAAGCAGAAGCAGGTGACGCTAATCGACACTTTGCGGCAATTAGAGACAGAAAAGGTTGATCTGGAGAACACTGTTGTTGATGAGAGCCAAAGACAGTTGAATGATCAAGAGGCTTCCTCTAGATTAAGGCAGGAAAAATCTAGTGCAAGTGCAAGTGAGTCTGATGATGATAATGAGAGAAATGATGCAGCAGAGGAAGAGACAGACGACGATGACACTGCCTTTTTTGACACTCGTGATTTTCTATCATCATCCAATTCTTTTAAAAGTAACGGATCTGATTTTAGGGCCTCATCTTTCTCTTCAGAGGATGAAGGACTCTATGCAGTTGAATCAGAGGAGGATGTTGATCCTTCAATTAGATCTGTTGGAACCAACTATCCGTATGTTAAGCGTCGTAAGAAATTGCCTGACCCTGTTGAAAAGGAGAAAGGTGTCAGTCTTTGGTCAATGATTAAGGATAACATTGGGAAGGATCTAACCAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTCTCCTCCCTGCAAAAATGTTGTGAAGAAATGGAGTATTCATATCTTCTGGACCGAGCATATGAGTGGGGAAGGAGGGGTAATAGCCTCATGAGGATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCAACTGAAGGGAGAATTTGCAAACCTTTTAATCCCTTACTAGGGGAAACATATGAGGCTGACTTTCCTGATAAAGGCTTTCGATTTTTCTCAGAGAAGGTCAGTCATCACCCAATGATAGTCGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGGGGATAGCAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTCGGCATTTTGACTCTGGAATTTGATGATGGTGAAGTATTTCAGTGGAGTAAGGTTACTACATCAATATACAATCTTATATTGGGAAAACTGTACTGTGATCATTATGGTACAATGCGTATACAGGGAAATCGAGACTACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCATCAGGTTCATGGTATTGTTCAGGATAGAAATGGGAAAACATTGTCTACATTACTTGGAAAATGGGACGACAGCATGTATTATATTAATGGAGACTATAGTGGGAAGGGGAAAGGTTATGAATCGATGTCAGATACCCATCTACTATGGAAGCGTAGCAAGCCTCCCAAGTTTCCCACTAGATATAACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGACCAAAGGCATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAGTTGCGGTTAGAACAACGGCAACGCCAGGCTCGGAAAATGCAAGAGAGTGGTTGGGAACCACGGTGGTTTGCGAGGGATAAAGCAAGTGGCACCTACCACTACCTAGGAGGGTATTGGGAGGCCCGAAATCAAGGAAACTGGAACTCCTGTCCTGACATTTTTGGCCAGATTCCTTCTGATCATCTCTCAGACGAAGGTCAATAA 2337 0.4733 MHPFCCVSAVSDHSSPFAMPPLPPAAAAARSDSAPRHGQLQHCIANGSLPPAPAAVDVRINDLVGNGISGILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNSETEKGSKVIGEESVRIISRNRNSSHVNHRRNPVGEIHLKVSTIRESRSDDKRFSVFTGTKRLHLRVEAREDRVAWMEALQAVKDMFPRISNSELMAPVDNVAVSTDKLRHRLMEEGVSEAAIQDSEQIMRNEYAALQNQLLLLKQKQVTLIDTLRQLETEKVDLENTVVDESQRQLNDQEASSRLRQEKSSASASESDDDNERNDAAEEETDDDDTAFFDTRDFLSSSNSFKSNGSDFRASSFSSEDEGLYAVESEEDVDPSIRSVGTNYPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNSLMRILNVAAFAVSAYASTEGRICKPFNPLLGETYEADFPDKGFRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNRDYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTLSTLLGKWDDSMYYINGDYSGKGKGYESMSDTHLLWKRSKPPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEMANSEKLRLEQRQRQARKMQESGWEPRWFARDKASGTYHYLGGYWEARNQGNWNSCPDIFGQIPSDHLSDEGQ 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01003 778 MobiDBLite consensus disorder prediction 290 309 - -
Cca05g01003 778 Gene3D - 485 659 - -
Cca05g01003 778 SUPERFAMILY Oxysterol-binding protein-like 394 772 IPR037239 -
Cca05g01003 778 Coils Coil 235 283 - -
Cca05g01003 778 Pfam Oxysterol-binding protein 399 753 IPR000648 GO:0008289
Cca05g01003 778 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 770 - -
Cca05g01003 778 Coils Coil 704 724 - -
Cca05g01003 778 Pfam Pleckstrin homology domain 73 189 - -
Cca05g01003 778 MobiDBLite consensus disorder prediction 310 326 - -
Cca05g01003 778 CDD PH_ORP_plant 68 200 - -
Cca05g01003 778 Gene3D - 696 758 - -
Cca05g01003 778 SUPERFAMILY PH domain-like 68 197 - -
Cca05g01003 778 SMART PH_update 66 195 IPR001849 -
Cca05g01003 778 ProSiteProfiles PH domain profile. 65 193 IPR001849 -
Cca05g01003 778 MobiDBLite consensus disorder prediction 279 327 - -
Cca05g01003 778 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 770 IPR000648 GO:0008289
Cca05g01003 778 Gene3D - 66 195 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01003 Cca-Chr5 26179231 26186033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01003 K20456 - gmx:100817212 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01003 05 26179231 26186033 Cca05g01003 05 26179231 26186033 ECH