Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01001 ATGAAATCCAAAGCCGCCGGAAACGCCGCGCCGACCGAGACCGCCGTGGTCGGAGCCGGGAGCAGCAGCTCTCCGAGTCCTCCGCCGTCGCCGCGGCGTCACTCCGGCATTTCgcggtgccggaggcggatgcggccggcgaaagagtcggcggagagtcggcggctggtggcgAGCATGATGGCGCGGCGGAGCCTCCGGTACTTCTTCCTGCTGCCGGTGGTGTACATCTCGGGGTTGCTGATGTGTGTGGGGCCCTTCTCCTCCCTCATTGGCCACACTCCTCTTCCCGGTTCCCGCTACCGCACCCACCAGATCTTTCACAACCTCTGCCACCATATCCAAGCCGATAATTCCTCTGCCATCCAGTTGGCTTCTGTGTGGAAATACAAAAGGAAGTTGAGAGAGCAGAAGCCTTGTCCGAATTTGACGGCTTTGCATCGTGAACATTTTGTGTCGCCTGGGCTGAATGGTTTTTTGATTGTGGAGGCCAATGGGGGTCTTAATCAGCAACGCTCTGCGATTTGCAATGCGGTGGCTGTGGCTGGACTCCTGAATGCAATACTAGTTATACCTCAATTTGAATTCCACAATGTGTGGAAAGATCCAAGTGAATTTGGGGATATATACGATGAAGATCATTTTATATCCACCCTTGATGGTTATGTGAAGGTGGTTAAAGAGCTGCCTGAGGCACTAATGGAGCGGCATAATTACAATATGAGTAATATCACTAACATCCGAGTTCAAGCTTGGTCTCCAGTCAGTTATTACCTTGGAGTTGTTTCTCCTATCTTGCAAAAGGAAGGGGTAATTCGAATAGCTCCATTTGCCAACCGTTTGGCAATGAGTGTCCCTCCACATATTCAATTTCTAAGATGTCTTACTAACTATAAAGCATTGAAGTTTTCCTCTTCAATATCTGCACTAGCTAAGAAACTAGTTTACCGAATGATTGAGAAGAGTTCAAGGACAGATGGAAAATACATTGCCGTGCATCTTCGTTTTGAGGAGGATATGGTAGCATTCTCCTGTTGTGTATATGATGGAGGACAGGAAGAAAAGTTGGAAATGGATTCAGTCCGAGAAAAAAGCTGGAGGGGAAAATTTAAAAGAAAAGATCGTGTCATTTTACCTGAACTCAATCGAGTAGAAGGAAAATGCCCGCTAACTCCTCTAGAAGTTGGTATGATGCTACGTGGCATGGGATTTGATAACAGTACTTCAATATACTTAGCTTCTGGGAAAATATATCATGCAGAGAGATATTTGGCTCCTCTGTTAAAGATGTTTCCCAATCTTTATACTAAGGAGTCTCTTGCAACACCAGATGAGCTTGCTCCTTTTATGGGTTATTCCTCCCAATTGGCTGCACTGGACTACACAGTATGCTTGATTAGTGAGGTTTTTGTGACAACTCAGGGAGGTAACTTTCCTCATTTTTTGATGGGCCATAGAAGATTCCTTTATGATGGCCATGCCAAGACCATTATCCCAGATAAGCGCAAGCTTGTTGTTCTTTTGGATGACGTGAGTATTAGTTGGAAAGCTTTCAAGGATCAGATGGAAGACATGCTCAGTGAAAGTGACCGCAAGGGAATCATGGTTCCTAGAGTTAGAAAAATAAACAGAAAAACTTCTGTCTACACATACCCCTTACCAGAATGCAGGTGCCTGCAACAGTCTCTTGCCAATCAAATTGACCACCATCTTGACATTTTGGATAATTATAACGGAACAAAATCTTAA 1749 0.4345 MKSKAAGNAAPTETAVVGAGSSSSPSPPPSPRRHSGISRCRRRMRPAKESAESRRLVASMMARRSLRYFFLLPVVYISGLLMCVGPFSSLIGHTPLPGSRYRTHQIFHNLCHHIQADNSSAIQLASVWKYKRKLREQKPCPNLTALHREHFVSPGLNGFLIVEANGGLNQQRSAICNAVAVAGLLNAILVIPQFEFHNVWKDPSEFGDIYDEDHFISTLDGYVKVVKELPEALMERHNYNMSNITNIRVQAWSPVSYYLGVVSPILQKEGVIRIAPFANRLAMSVPPHIQFLRCLTNYKALKFSSSISALAKKLVYRMIEKSSRTDGKYIAVHLRFEEDMVAFSCCVYDGGQEEKLEMDSVREKSWRGKFKRKDRVILPELNRVEGKCPLTPLEVGMMLRGMGFDNSTSIYLASGKIYHAERYLAPLLKMFPNLYTKESLATPDELAPFMGYSSQLAALDYTVCLISEVFVTTQGGNFPHFLMGHRRFLYDGHAKTIIPDKRKLVVLLDDVSISWKAFKDQMEDMLSESDRKGIMVPRVRKINRKTSVYTYPLPECRCLQQSLANQIDHHLDILDNYNGTKS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01001 582 Pfam GDP-fucose protein O-fucosyltransferase 159 488 IPR019378 -
Cca05g01001 582 PANTHER O-FUCOSYLTRANSFERASE 10-RELATED 22 564 - -
Cca05g01001 582 MobiDBLite consensus disorder prediction 1 52 - -
Cca05g01001 582 PIRSF UCP009360 32 562 IPR024709 -
Cca05g01001 582 CDD O-FucT_plant 159 496 IPR024709 -
Cca05g01001 582 PANTHER - 22 564 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01001 Cca-Chr5 26140223 26145736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01001 158 558 Miscellaneous Gene Families AT1G22460 38.795 1.69e-90 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01001 - - gmx:100812590 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01001 05 26140223 26145736 Cca05g01001 05 26140223 26145736 ECH