Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00995 ATGATAGCATCTGAAGTGAATGAGGCCCAGGGTGTGTCGCCGGATTCAGGAAAAAATGGAACAGCTGCTCATGCTTCTGCATCCTTGAGCAGTTCACTGAAGCAGGTCAATGTGTGTTCTCCTAATGAGCAAGGATTTTCCAAAGCGTCAAATGTCGCTTTTATTTCAATGCCCCCCATGCATATCAATGAGCAAGTGGAACATGGTGATTTGCGTTTCGTGCCAATGCATGGTGGAGGAGTTGAATCAAAATCGTTTTCTGAGCCCACTGGTTGTAGAGGGTCATCAGGAACTAATAAAAACAAGGACTCAGTCCCTTGTGGTCAGATTGGGTTTTGTGCCCAGAAAAATTATTTTAGTCCACACTGGTCCGTAGAGGCTGTTGAGAAGGCATCAGAGAAGGGCGATGTTTTTAATGCTCTCTTTCATGTCAATGCTCACAATAAACATGAGGCCTACTGCAAAATTGATGGAGTGTCAACTGATATTCTTATTGGTGGGATTCCAGCCCAAAATAGAGCTGTGGAAGGTGATATTGTTGCGGTTAAGATTGATCCCTTGCCATTATGGACAAAAATGAAAGGACCAAACGGGTCATGTAATAACACTGCAACACAGGAGGGTAGCAATCTTACAGAAGATAATGAAGAGGGTGGTAATATTTGTAAAGGGAAAGCTAAGGTAGATGCTGATTATGAGTCAGTCCATTGCAGAAGCTATCCTGGTCAAATCAAGGAAGATGCTGATCAAAACTCCTCCAATAGAAGTTATCCTTCTCCTGAAAAAAGATTAGTTTACGAGGATAATACCTCCCGGGGTTCTACTAACCATTTAGATGTACATGGAATGATCAGCCATGACAGCATTAATGGACATCACTGTGCTGCTCCTGATTCCTTAAAGATCAATTCTTGTAGTGGACATAGTGAAATAGTTAATGCAGTGGAAAAATTATGTTTGTTGGTTAATTCTTTTCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCTATTATTGAGAGATCTCCACGTCGAGAGGGTATTGTTGGTCACCTAAATGTGAAGCAGTGGGTTCCTTTCAGGGACataagcaaaaaggatgtgaagaagaataagaatTTGATTTCTGAGCATGAATATATCCAGCTGATACCAATTGATCCAAAGTTTCCAATTATGATGCTTCCTGTTAGAAAGTTACCTGAGTGTATTAAGAAAAGGCTGAAAAGTGGCGATGTGACAATGGAAATGGATCTGGTAGCTGCACAAATTGATAATTGGGTTGAAGAAAGTCCTTTTCCTGAGGCTCACGTCTTCCGTGTTTTTGGACGTGGTGGTGAAGTACAGTCCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTGTCTGAATTTCCACCAGAAGCTCTGTCCTGTTTGCCATGTGTTCCTTGGGAGGTGCCGCTGAAGGAAATTCAGAGTAGAATAGACCTTAGAAATATGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCTCTGTCAATTGAGAAGTTACCTAATGGAAATTATAGAGTAGGTGTGCACATTGCTGATGTGTCATATTTTGTTTTACCTGACACAGCCTTAGATAGTGAGGCCCAGCGTAGGTCAACAAGTGTCTATATGTTGCAAAGGAAGTTACCAATGTTGCCTGCATTATTGTCAGAGAATATTGGTTCACTTAGTCCTGGAGTGGATCGACTTGCGGTTTCCATGCTATTGGATATAAATCTTGCAGGGGATGTTGTAGACTGCTGGATTGGTCGAACTGTTATACATTCTTGTTGTAAGCTTTCATATGAACATGCTCAGGACATCATTGACAGGGCTTTTGATTTTGAAGGTTCAAACTTTATTGAAGATGGTTATCCTAGAGTGTACGGCCATTTTGAATGGCCTGATGTTATTAAGTCTTTGAAGAGTCTTTATGAAATTTCAAATGTTTTGAAACAGAAGAGGTTTACTGATGGGTCTCTACGGCTTGAAAACCCCAAAATTGTTATCTTGTTTAATGAAGATGGAGATCCTTATGATAGTATGCTTTCTGAAAGAAAAGAGTCTAATTTTCTTGTTGAGGAATATATGCTGTTGGCCAATAGAATTGCAGCTGAAGTTATATGTAGAGCTTATCCTGATGGCGCATTGTTGCGGAGGCATCCTGAACCTAATATGCGGAAGCTGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTAGATTTGAACACATCTTCTTCTGGTCAGTTCCATTGGTCGTTAGAGCAGATCCGGGAAAAGCTCAAAGGTGATCCTGTGCTTTATAATATACTTATTTCTTTTGCTACAAGACCAATGCAGTTGGCATCTTACTTCTGTAGTGGAGATTTAAAGGGCAGCGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTTACATCACCTTTGCGTCGATATCCGGATATTATTGTTCACCGAACACTACTGGCTACTATAGAGGCTGAGGAATTATATATGAAGCATTACAAGGGAGTGAAAGTGCAAAAAAGATGTTTCACAGGCATTAATTTTGATAAAAATGCTGCAGAATCCATAGAAGGTAGGGAAGCACTATCAGCTGCAGCTGAGAAGCATAGTGTTCCATGTGCTGAAATACTTGCAGATATTGCTGCTTATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATTTGGTTTCTCCTGAAGAAAAAGGAGGTCTTATTGTCTGAAGCAAGAATACTGGGACTGGGCCCAAGATTCATGTCAATTTATATTCAAAAGCTAGCTATTGAGCGGCGCATATATTATGATGAAGTTGAAGGCTTGACTGTGGAGTGGCTCGAGACTACATCCACTTTGGTGCTCAGCATGTGTAATAATAGGTGTGCATTTAGGAAGGGCAGCTCTAACAAGTGGAGGGCATTTGAAGAAGTTGCATTGCTTACTTGTCCATATAACCTGAAAGTTACCATGGATAATTCTAAAGTAAGTGATGCAAAAGTGGATGATAGTATATCTGTCTTGGACAGGGAGCCCATTTCAGGATCAGACTCGGTGGAAACTGAAATTGACCCTGCTGTTTTTCCACTAACAGTCCGTGTTCTTTCAACAATTCCAGTCGCACTTCATGCTGTTGGTGGTGATGACGGGCCCCTCGATATTGGAGTGAGGCTGTACATGAGCTCCTATTTTGGGTGA 3267 0.4059 MIASEVNEAQGVSPDSGKNGTAAHASASLSSSLKQVNVCSPNEQGFSKASNVAFISMPPMHINEQVEHGDLRFVPMHGGGVESKSFSEPTGCRGSSGTNKNKDSVPCGQIGFCAQKNYFSPHWSVEAVEKASEKGDVFNALFHVNAHNKHEAYCKIDGVSTDILIGGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGSCNNTATQEGSNLTEDNEEGGNICKGKAKVDADYESVHCRSYPGQIKEDADQNSSNRSYPSPEKRLVYEDNTSRGSTNHLDVHGMISHDSINGHHCAAPDSLKINSCSGHSEIVNAVEKLCLLVNSFPSKRPTGRVVAIIERSPRREGIVGHLNVKQWVPFRDISKKDVKKNKNLISEHEYIQLIPIDPKFPIMMLPVRKLPECIKKRLKSGDVTMEMDLVAAQIDNWVEESPFPEAHVFRVFGRGGEVQSQLDAILFQNAICLSEFPPEALSCLPCVPWEVPLKEIQSRIDLRNMCIFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPDTALDSEAQRRSTSVYMLQRKLPMLPALLSENIGSLSPGVDRLAVSMLLDINLAGDVVDCWIGRTVIHSCCKLSYEHAQDIIDRAFDFEGSNFIEDGYPRVYGHFEWPDVIKSLKSLYEISNVLKQKRFTDGSLRLENPKIVILFNEDGDPYDSMLSERKESNFLVEEYMLLANRIAAEVICRAYPDGALLRRHPEPNMRKLREFMAFCQKHGLDLNTSSSGQFHWSLEQIREKLKGDPVLYNILISFATRPMQLASYFCSGDLKGSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEELYMKHYKGVKVQKRCFTGINFDKNAAESIEGREALSAAAEKHSVPCAEILADIAAYCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLETTSTLVLSMCNNRCAFRKGSSNKWRAFEEVALLTCPYNLKVTMDNSKVSDAKVDDSISVLDREPISGSDSVETEIDPAVFPLTVRVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00995 1088 Gene3D - 113 212 - -
Cca05g00995 1088 SUPERFAMILY Nucleic acid-binding proteins 331 460 IPR012340 -
Cca05g00995 1088 ProSitePatterns Ribonuclease II family signature. 809 833 IPR022966 -
Cca05g00995 1088 Pfam Dis3-like cold-shock domain 2 (CSD2) 379 458 IPR041505 -
Cca05g00995 1088 SUPERFAMILY Nucleic acid-binding proteins 450 926 IPR012340 -
Cca05g00995 1088 SMART RNB_2 488 842 IPR001900 GO:0003723|GO:0004540
Cca05g00995 1088 MobiDBLite consensus disorder prediction 9 26 - -
Cca05g00995 1088 MobiDBLite consensus disorder prediction 242 265 - -
Cca05g00995 1088 Gene3D - 362 446 - -
Cca05g00995 1088 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00995 1088 PANTHER DIS3-LIKE EXONUCLEASE 2 84 1086 - -
Cca05g00995 1088 SUPERFAMILY Nucleic acid-binding proteins 116 340 IPR012340 -
Cca05g00995 1088 PANTHER RIBONUCLEASE 84 1086 - -
Cca05g00995 1088 Pfam RNB domain 488 840 IPR001900 GO:0003723|GO:0004540
Cca05g00995 1088 Hamap DIS3-like exonuclease 2 [DIS3L2]. 4 1063 IPR028591 GO:0000175|GO:0034427
Cca05g00995 1088 MobiDBLite consensus disorder prediction 82 101 - -
Cca05g00995 1088 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00995 Cca-Chr5 25989985 25996598 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00995 K18758 - gmx:100817387 1928.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00995 05 25989985 25996598 Cca05g00995 05 25989985 25996598 ECH