Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00988 ATGGAAccaacccaagcccaaacccaaaccaagctcacccgaacccaatccTCGCTGCTTCGGTGTTCCTCCCCGACCACGCGCTCTTCCATCCATAGCCTCTCTTCCGTCAACGAGGAAGACTTTTCCGACGAGTCATCGAGCAAGAGAAAGAGCAAACCGGTTAAAGCTAGAACCGCTTCGATCCGGTTCGGACCGGTTCTCGGTTTATTCAGCGCGTGCACGCTCTTTTCATACTTCTTCTATCTCGGGGCCCGAGCCGGGCCCACCTCCGAGAACGTGCTGGTGGTGCTGGTTTTTCTCGCGGTGGTTCTCTACTTCGCGAACCGGAACAAGGTGTTGATCCAGCGAACCGTTTCGGTTCTGAAGCATGCCTGGGATGGGAACTTGAAAAGGCTCGGTTTTTCTGCAAAGGGTAGTGAGAAGCCGGTTCAGTGGTTCATTGGGGATGCCACCGGTTCAGTGGTGAGGAGGGagaacaaaaataagtataagaataggaataagaataagGGTAATGATGATGATGGTGAGGGGGTTAGGAGAGAGGGGGTGGAGTTTTATAGTAATGGGGATTTTTATGAGGGGGAGTTTCATGGAGGGAGGTGTAATGGGAGTGGGGTGTATCACTATTTTGTGAGTGGGAGGTATGAGGGGGATTGGGTTGATGGGAGGTATGATGGGTATGGGATAGAGAGTTGGGCTAGGGGGAGTAGGTATAAGGGGTGTTATAGGCAGGGTTTGAGGCATGGTTTTGGGGTTTATAAGTTTTACACTGGGGACTCTTATGCTGGGGAGTGGTGTAATGGCCAGAGTCATGGGTTGGGAGTGCAGTCTTGCTCTGATGGGAGTTGTTATGTTGGGGAGTTTAAGTATGGGGTCAAGCATGGACTTGGATGTTACCATTTCAGGAATGGAGATAGATATGCTGGAGAGTACTTTGGAGACAAAATACACGGATTTGGGGTCTACCACTTTGCCAATGGCCACTGTTATGAAGGATCATGGCATGAAGGTCGAAGACAAGGTTATGGCGTGTATACTTTTAGAAACGGTGACAGAAAATGTGGTGAATGGGATGCTGGCAATCTCAAGCTCTCTCTACCACCGCTATATGATGCTATCCTTCGTGCAGTTCAGGCTGCTAGGAAAACTGCTGAAGATGCTATAAAGCTTCCCCGGAAGGATGAGCATGTGAACAAAGCAGTAATTGCTGCAAACAAAGCAGCCACTGCTGCTAGAGTTGCTGCAGTGAAAGCTGTCCAGAACCGAATGGGTGGAAAATTTTGCGATATTGATGTCTAA 1305 0.4667 MEPTQAQTQTKLTRTQSSLLRCSSPTTRSSIHSLSSVNEEDFSDESSSKRKSKPVKARTASIRFGPVLGLFSACTLFSYFFYLGARAGPTSENVLVVLVFLAVVLYFANRNKVLIQRTVSVLKHAWDGNLKRLGFSAKGSEKPVQWFIGDATGSVVRRENKNKYKNRNKNKGNDDDGEGVRREGVEFYSNGDFYEGEFHGGRCNGSGVYHYFVSGRYEGDWVDGRYDGYGIESWARGSRYKGCYRQGLRHGFGVYKFYTGDSYAGEWCNGQSHGLGVQSCSDGSCYVGEFKYGVKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGSWHEGRRQGYGVYTFRNGDRKCGEWDAGNLKLSLPPLYDAILRAVQAARKTAEDAIKLPRKDEHVNKAVIAANKAATAARVAAVKAVQNRMGGKFCDIDV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00988 434 SMART morn 307 328 IPR003409 -
Cca05g00988 434 SMART morn 238 259 IPR003409 -
Cca05g00988 434 SMART morn 192 213 IPR003409 -
Cca05g00988 434 SMART morn 284 305 IPR003409 -
Cca05g00988 434 SMART morn 330 351 IPR003409 -
Cca05g00988 434 SMART morn 261 282 IPR003409 -
Cca05g00988 434 SMART morn 215 236 IPR003409 -
Cca05g00988 434 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 260 362 - -
Cca05g00988 434 MobiDBLite consensus disorder prediction 1 37 - -
Cca05g00988 434 Gene3D - 269 314 - -
Cca05g00988 434 Gene3D - 315 369 - -
Cca05g00988 434 Gene3D - 174 223 - -
Cca05g00988 434 Gene3D - 224 268 - -
Cca05g00988 434 Pfam MORN repeat 240 261 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 217 239 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 194 211 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 286 308 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 309 330 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 332 354 IPR003409 -
Cca05g00988 434 Pfam MORN repeat 263 284 IPR003409 -
Cca05g00988 434 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 18 428 - -
Cca05g00988 434 MobiDBLite consensus disorder prediction 159 181 - -
Cca05g00988 434 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 188 293 - -
Cca05g00988 434 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 18 428 - -
Cca05g00988 434 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00988 Cca-Chr5 25927654 25931087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00988 190 368 Acyl Lipid Metabolism Gene Families AT1G21980 37.989 1.17e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00988 - - gmx:100806547 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00988 05 25927654 25931087 Cca05g00988 05 25927654 25931087 ECH