Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00984 ATGGCcactctacactcccacttccgcatcctcgcttactcactctcactctcactcatccttctaactctccacttcaTAACGGCAACCGAACAAGAAGACACCCCCATCACACGCTTCCAACGCTACCTCCGCATCAACACGGCCCACCCCACCCCAGACTACACCTCAGCGGTCTCCTTCCTCAAAGCCCAGGCCCACTCCCTGGGCCTCCAAACAAAAACCCTCGAATTCACCCCAGGCAAGCCCCTCCTCCTCCTCACGTGGCCCGGCACTGACccctccctcccctccctcctcctcaactcccacctcgactccgtcccCGCCGAGCCCGCCAAGTGGCTCCACCCTCCCTTCTccgcccaccgcaccgccgacggccgcatcttcgcccgcggcgccCAGGACGACAAGTGCATCGCCATCCAATACCTCGAGGCCATCCGCAACCTCAAGGCCCAATCCTTCGCGCCACTCCGCTCCCTCCACGTGTCCCTCGTCCCCGACGAGGAGATCGGCGGCCTCCACGGCGCCGCCAAGTTCGTCGAGTCCGAGGACTTCCGCCGGCTCAACGTCGGATTCGCGCTCGACGAGGGACAGGCCTCCCCCGGCGACGAGTTTAGGGTTTTCCACGCGGATAGGGTTCCGTGGAACGTGAAGATCCGTGCCCGGGGAAGCCCCGGCCACGGGTCCAGGTTGTTCGACGGGAGCGCCGTCGAGAATCTGATGGAGAGCGTGGAGGTTGTGAGTAGGTTCAGGGAGAGCCAGTTCGATGTGGTGAAGGCGGGGAAAGCGTTGAACGCTGAGGTTGTGTCCGTGAATCCGGTTTATGTCAAGGCTGGGGTTGCTTCCGGTGATGGGTTTGTGATGAACGTGCAGCCTTCGgaggcggaggctgggtttgatctgaggctgacgccgaCCACGGATCCCGAGGAAATGAGGAGGCGGATTGCGGCGGAATGGGCGCCGGCTGTTAGGAATATGTCATATGAGATTATAGAGAAAGGACCCATTAGAGACTACTTGGGACGCCCGTTAATGACTGCAACTAATGATTCCAATCCATGGTGGTCAGTTTTCAAGCAGGCTATCACATCTGTTGGAGAAAAACTTTCAAGGCCTGAAATTCTTGGGTCCACAACTGATGCTCGATTCCTAAGACAGAAAGGAATTCCTGTACTCGGTTTCTCCCCAATGAAAAATACTCCCATCCTGCTTCATGATCACAATGAGCATTTACGAGATACCGTGTTCATGAAGGGAATACAGTGTAAAACCATAAATAGCAACATTGATATCCGATATTGCTTCAATTCGCTCGTGGTGGGGACTGGAGATGGTACATACTTATTATTGGTTAAAGAATGTGCTTTCCACTTCAAGTCCTCTCTTCCATCTACCGATCAAAATGTATATGTAGAAGATTAG 1434 0.4693 MATLHSHFRILAYSLSLSLILLTLHFITATEQEDTPITRFQRYLRINTAHPTPDYTSAVSFLKAQAHSLGLQTKTLEFTPGKPLLLLTWPGTDPSLPSLLLNSHLDSVPAEPAKWLHPPFSAHRTADGRIFARGAQDDKCIAIQYLEAIRNLKAQSFAPLRSLHVSLVPDEEIGGLHGAAKFVESEDFRRLNVGFALDEGQASPGDEFRVFHADRVPWNVKIRARGSPGHGSRLFDGSAVENLMESVEVVSRFRESQFDVVKAGKALNAEVVSVNPVYVKAGVASGDGFVMNVQPSEAEAGFDLRLTPTTDPEEMRRRIAAEWAPAVRNMSYEIIEKGPIRDYLGRPLMTATNDSNPWWSVFKQAITSVGEKLSRPEILGSTTDARFLRQKGIPVLGFSPMKNTPILLHDHNEHLRDTVFMKGIQCKTINSNIDIRYCFNSLVVGTGDGTYLLLVKECAFHFKSSLPSTDQNVYVED 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00984 477 Pfam Peptidase family M20/M25/M40 100 425 IPR002933 GO:0016787
Cca05g00984 477 Gene3D - 356 429 - -
Cca05g00984 477 SUPERFAMILY Bacterial exopeptidase dimerisation domain 218 331 IPR036264 -
Cca05g00984 477 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 29 428 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cca05g00984 477 SUPERFAMILY Zn-dependent exopeptidases 33 425 - -
Cca05g00984 477 PANTHER AMINOACYLASE-1 21 427 - -
Cca05g00984 477 Gene3D - 220 327 - -
Cca05g00984 477 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 135 174 IPR001261 -
Cca05g00984 477 PIRSF ACY-1 26 434 - -
Cca05g00984 477 Gene3D Zn peptidases 27 219 - -
Cca05g00984 477 PANTHER PUTATIVE-RELATED 21 427 - -
Cca05g00984 477 Pfam Peptidase dimerisation domain 218 321 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00984 Cca-Chr5 25853462 25860144 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00984 K14677 - gmx:100817383 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00984 05 25853462 25860144 Cca05g00984 05 25853462 25860144 ECH