Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00983 ATGGGTCGGGGTATAACGCAAATGACTCTGCTGTTGTTGTTATGCTTCACCGCTCTCTTTTACGTGCTCCCTCTTGCAGAGGCCGTGTGGTTAACAATCCCCACTTCGGGTGCTAAGTGCGTGTCTGAGGAAATCCAGACAAACGTCGTTGTTTTAGCCGATTACTATGTTATCACCGGACATGATCCACATCATCATACGGTTTCGGTCAAGGTAACATCACCTTATGGAAATAGCCTTCACCATAACGAAAATGCCACACAAGGTCAATTTGCATTTACAACTGTGGAGAGTGGGAGCTATGTGGCGTGCTTTGAGATGGAAGGTAAACCTCAAGAAGAAGCATCTGTCAGCCTTGAATGGAAAACTGGAATTTCTGCCAAGGATTGGGAGTCTGTTGCAAAGAAAGAAAAGATCGAGGGAGTTGAACTTGAGCTCAGGAAACTTGAAGGAGCAGTGGGAGCCATCCACGGCTATCTAATTTATTTGAAGGATAAGTAA 501 0.4531 MGRGITQMTLLLLLCFTALFYVLPLAEAVWLTIPTSGAKCVSEEIQTNVVVLADYYVITGHDPHHHTVSVKVTSPYGNSLHHNENATQGQFAFTTVESGSYVACFEMEGKPQEEASVSLEWKTGISAKDWESVAKKEKIEGVELELRKLEGAVGAIHGYLIYLKDK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00983 166 SMART EMP24_GP25L_2 28 166 IPR009038 -
Cca05g00983 166 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 5 166 - -
Cca05g00983 166 Pfam emp24/gp25L/p24 family/GOLD 30 165 IPR009038 -
Cca05g00983 166 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 5 166 IPR015720 -
Cca05g00983 166 ProSiteProfiles GOLD domain profile. 38 148 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00983 Cca-Chr5 25849277 25853257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00983 K20352 - gmx:100527637 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00983 05 25849277 25853257 Cca05g00983 05 25849277 25853257 ECH