Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00970 ATGGACGAGCCCTCGCTGCAACTCGTCTCCGAAATCGCAACTCGCCTCGCTGAGCGAACTCGTCCCAACAAAGACTTCATCCTCAAATCCCTCCGACAAGCCACAGATGCTTTGTCCGAGTTAAAACAGTCTCCTCAGCCTAAAACGGCCAAAGAAGTAAAGGCTTCTAAGAAACGAGAAGCTGCTTTGAAGTCCTTGGCAAATGCTGTGGTTTCCGGTGGTCTACTTCAACATGCAGATAGGGATGTTAGGCTTAGGGTTGCTATTTGCGTCACTGATCTTTTTAGACTTATGGCACCTGAACCGCCTTTCGAAGACAAGCATTTGAGGGATGCGTTTAAGCTTATAATTAGTTTGTTTGCGGATTTAGCTGATACTGCCAGTCCATTCTTTTCTAAAAGGGCTAAAGTATTGGAGACTGTGGCTCAATTAAGGTGTTGTGTGATAATGCTGGAGATAAACTGCATAGACCTGGTTCTTGAGATGTTCAATACTTTCTTCTCGGTTGCAAGAGATGAACACCATGATAGTTTGATCAGGGCAATGATTTCTATAATGATAAACATTTTGAGTGAGAGTGAGGGGGCATCTCAGCAACTATTGACAGTGATTTTACGAAATATTGTAAAGCAAAAACAAGATGCTGCTTATCAACTTGCTGCATCAGTCATTGAAACTTGTGCACAGGAGGATGAGCTGAACCCCCTAGTTTGTGGGTTTTTAACTTCTTGTATACATGACAGAGATGCTATGGACAGTGAACTTAAAGAATATTACCATGAAATTTTCTTTAAAGTTGTCTGGTGTGCGCCTCAGATGCTTCTTGATGTTGTCCCAACCTTAATGAAAGAATTATTGGCTGATGAAGTTGATGTACGTATAAAAACTGTTAAGTTGGTGGGGAAGCTTTTTGCACGTCCTGAACATCATGGTGCTCTGAAGTATCATGAACTTTTTGTGGAGTTTGTGAAAAAATTTTGTGATAAATCTGTGGATGTTAGGATTAGTGCTCTACAATGTGCTAAAACTATCTATTTGGAGAATCCCTACGCAAGAGAATCCCATGGAAATGAAATTATCACTTGTATTGAAGATAGATTATCAGACTTTGACGACCAAGTGAGAAAGCAGGCAGTTCTTGTTGCCTGTGATATTTTCAGGTCAAACCTGACAACTGATCCATCCAAACTAATGAAACTGCTATCTCAAGCCACCGAAAGACTTCGGGATATAAAGATGAATGTTAGAAAGAGTTCCTTGCAGAAGTTAATTATGGTTTATCAAGATTATTGCAAGAAATGTTATGAAGGCAGCATGACAATTAGCAATCACTTTGAAGAAATTCCATGTAAAATTATGATGCTGTGCTATAATAAAGATTGTAAGGAGTTCAGGTCACAGCACATGGAATTTGTTCTTGCTGATGATCTATTCCCCAAGGATCTTCCAGTTGTGGAAAGGATAAACCACTGGATACACATGTTTTCTCTTTTCAGTTTCTCTCATGAAAGGCTACTGAATACTATTTTGACTCACAAGAGAAGGTTCCAAAATGAAATGAAAAATTATTTGGCAATGCGGAAGAAATCGAAGGAAATTTGTTCTGAAGAAAGGCAGAAGAAGATTGAAAGTATGTTTACAAAAATGGCAGCATTCTTTCCGGATTCTCACAAAGCTGAAGAGTGTCTTCATAAGTTAAACCAAATTAAAGATAATAGTGTGTTTAAATCACTTGAAAAATTGTTGGAGGAACAAGCCTTCACCACGGTTGAACAGAATATGAAAGATAAACATCTGGTTATTGGAGACAACATACCAAATTATGAGTTTTTACGTCCGCTCTTGTCGAAATGTTCAGACAACATTTTCAGCTCAGAGCATGTCCAATGTATCTTGGATTATCTTTCCAATAATGAAAATGGAAATAAGGATTTGGAGGATTCTTCTGCAAATCTTCTGCTGGCTATTGTTCGAAATTTTCCCTCTATGATGAAAGGCTTGGAAAAGCAGTTCCAAAAGTTATTGGAGCAGATAAGTCCTGTAAATGACAAGCTGATTGATGTCATAGCAAAGGCAGGCTCTCATATGTCTTTCAATCATAGTGACATTTTTCCATTTCTCAAAAGAATTTGCTTTGATGGAACTCGCAGACAGGCCAAATTTGCATGCTCTGCAATTGCTGCTTTAAGTTATGAACAATCAGTTTTCAAAAAGTTATATGAGGAACTAATTGATTCTTTATATAGCGAGTGGAATGTCCCTACAATTTTGCAATCTATGGGATGCATTGCACAATACTGTGTTTCAAATTTTGAAACTCGAGATGAAGAGATCACATCATATATATGCCAGAATATCATTCAAATGGAGCATTCGGATGATGGTCATGATGCAACATCCTTTCCGGATATCTCTCAATGTAGCAAATCTTGTCAATTAAAGATTTATGGGCTGAAAGCACTGGTGAAGATTTATTTGCATTATAAAGGGAGTCATGTCGAACATAATATTAATGGTTTGTTGGACATCTTGTCAAGAATGTTACGGGAAAGTGACAATTTCTTTAGTACATCTACGAGCTCATGTGAAAATGATAAGGCTCATATCAGATTGGCTGCTGCAAAGGCAATACTTCGTCTTGCTAGGAAGTGGGATTTTCATATTACTCCGGAGATTTTTCGATTCACTATATTGATTGCAAAGGATTCTTCTTTGTTTGTTAGGAGCACATTTCTTAATAAGACACAAAAGTTGTTGAAGGAGCATAAACTACCAATCAGATTTGCTTGTGCTTTTGCACTTGAGGATATGCAATATCAGAACTATAAATATATGACAGAGTTTATAAAGGATTACAGTATAGTAGCTGGTAGACGACAAACCTCTGTTGTTCCAGGAGCAATTGTTGATTACCCAGCATACATTTTGGTGTTTTTGATTCATGTGCTTGCACGGAATAATGACTTTCCAGTTGAAGTCTGTGAAGATGAAAAAGTATATGCTGACCTTTGTAGTCCACTCTTTTTTATCCTGCAGGTATTAGTTGACGTCAGTATTGTTGATGGTGACCTGGACATTGTTAATGTTGCTGTCCTACATGTATTTAGTATTTTTCGAGCAATCAGAAAGGTTGAGGATGCTGTTGATGTGCAGATGACAACTAAGCTTCATATGCTGGCTGAAATTGGGATATTTGCTTTGAATAAATTAAATCATGGTGGAATTTCCGTATTGAAAAATCCTGGACAAGTTTTATTGCCTTCATCATTATATAGAGCCAGTTCAAAATGTCCAGTGTCCTTTTTTGATGAAAATTTTCTAAGTAGAGTCTTTCATGTGCTTAAAAAATCTACTCTGCCTCATGGATATGCTCAAAAGACTGCAAAATCACTTCCTAAGCATGGTCATAAGGTTCAACAGGATGTTCTGAAGTCTAATATTAATATTTATGGTGTACTGGACTTGGCATCCAAACCGGATGATTTGTCAAGGAGAGAAATCGCAAATGATAAATCTGTGAGGCCAAATATCCCATCAAAGAAAAGGAAAAAAAGTGAGACTATGTCTGGTTCTGGATCCGTTGGTTTACATGAATGCTCTATGATTGAAAAGCGACAAAAATTAGCATCAAAACATTCTGGAAAGGCAATAGACAGAAACTTGCTTTCATCAAGTGATCCTGTGAGGTCTGAATCACATGGGCAAACCCGTAAATCAAAAAGAGCAGCTGCTTCTACGTTGAAGAATGCTGTGACAAGTAGCAATCATACTGTTGAACCATTCAAATGTCCTAGAACCAAACTGAAAGATACATATGGCTCAAAGTGGACCCGATGA 3837 0.3779 MDEPSLQLVSEIATRLAERTRPNKDFILKSLRQATDALSELKQSPQPKTAKEVKASKKREAALKSLANAVVSGGLLQHADRDVRLRVAICVTDLFRLMAPEPPFEDKHLRDAFKLIISLFADLADTASPFFSKRAKVLETVAQLRCCVIMLEINCIDLVLEMFNTFFSVARDEHHDSLIRAMISIMINILSESEGASQQLLTVILRNIVKQKQDAAYQLAASVIETCAQEDELNPLVCGFLTSCIHDRDAMDSELKEYYHEIFFKVVWCAPQMLLDVVPTLMKELLADEVDVRIKTVKLVGKLFARPEHHGALKYHELFVEFVKKFCDKSVDVRISALQCAKTIYLENPYARESHGNEIITCIEDRLSDFDDQVRKQAVLVACDIFRSNLTTDPSKLMKLLSQATERLRDIKMNVRKSSLQKLIMVYQDYCKKCYEGSMTISNHFEEIPCKIMMLCYNKDCKEFRSQHMEFVLADDLFPKDLPVVERINHWIHMFSLFSFSHERLLNTILTHKRRFQNEMKNYLAMRKKSKEICSEERQKKIESMFTKMAAFFPDSHKAEECLHKLNQIKDNSVFKSLEKLLEEQAFTTVEQNMKDKHLVIGDNIPNYEFLRPLLSKCSDNIFSSEHVQCILDYLSNNENGNKDLEDSSANLLLAIVRNFPSMMKGLEKQFQKLLEQISPVNDKLIDVIAKAGSHMSFNHSDIFPFLKRICFDGTRRQAKFACSAIAALSYEQSVFKKLYEELIDSLYSEWNVPTILQSMGCIAQYCVSNFETRDEEITSYICQNIIQMEHSDDGHDATSFPDISQCSKSCQLKIYGLKALVKIYLHYKGSHVEHNINGLLDILSRMLRESDNFFSTSTSSCENDKAHIRLAAAKAILRLARKWDFHITPEIFRFTILIAKDSSLFVRSTFLNKTQKLLKEHKLPIRFACAFALEDMQYQNYKYMTEFIKDYSIVAGRRQTSVVPGAIVDYPAYILVFLIHVLARNNDFPVEVCEDEKVYADLCSPLFFILQVLVDVSIVDGDLDIVNVAVLHVFSIFRAIRKVEDAVDVQMTTKLHMLAEIGIFALNKLNHGGISVLKNPGQVLLPSSLYRASSKCPVSFFDENFLSRVFHVLKKSTLPHGYAQKTAKSLPKHGHKVQQDVLKSNINIYGVLDLASKPDDLSRREIANDKSVRPNIPSKKRKKSETMSGSGSVGLHECSMIEKRQKLASKHSGKAIDRNLLSSSDPVRSESHGQTRKSKRAAASTLKNAVTSSNHTVEPFKCPRTKLKDTYGSKWTR 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00970 1278 Pfam Sister chromatid cohesion protein PDS5 protein 25 1092 - -
Cca05g00970 1278 Gene3D - 265 436 IPR011989 -
Cca05g00970 1278 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 4 1260 - -
Cca05g00970 1278 SUPERFAMILY ARM repeat 272 934 IPR016024 -
Cca05g00970 1278 MobiDBLite consensus disorder prediction 1262 1278 - -
Cca05g00970 1278 SUPERFAMILY ARM repeat 7 510 IPR016024 -
Cca05g00970 1278 MobiDBLite consensus disorder prediction 1200 1214 - -
Cca05g00970 1278 MobiDBLite consensus disorder prediction 1164 1187 - -
Cca05g00970 1278 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 4 1260 IPR039776 GO:0007064
Cca05g00970 1278 MobiDBLite consensus disorder prediction 1164 1278 - -
Cca05g00970 1278 MobiDBLite consensus disorder prediction 1239 1260 - -
Cca05g00970 1278 Gene3D - 506 953 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00970 Cca-Chr5 25596161 25625060 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00970 K11267 - gmx:100777822 1967.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00970 05 25596161 25625060 Cca05g00970 05 25596161 25625060 ECH