Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00953 ATGATGGATAAGAAGAGATGGTTATGGAAGAGGAAGTCTTCTGAGAAGAGCTCTGGTGAAACTGAAAGTTCAGGATCTGTTTCCTCTCATTCTGAGAGGTACTCAGATGAACAGGAGCCATTGAAGGAATCTCCTAGTAGAAGCAATCAGTCACCTGATGTCACATCAAAAGCTACGGCCTATGCTGAGGATGTTAACCATAGTTCATTAATTAATGAACATTTGCCTGAAGAAGTCACCTTTAAATATGTACCTTCTACAGGCATTGCAAGTGATGTCTCATCAGAGAAAGACGAAAATGGAGACAATGAAAATATAAAAGATGTAAAAGAAGGTGATCTGAATGATGGGTTGAAGAACATGTCAGAGAAGATATCTGCTGCACTAGTGAATGTCAATGTCAAAGAAGTCTTGGTTCAGCAGCATTCCAAAGTTGCTGAAGAAGCTATTGCAGGTTGGGAAAAGGCTAAAAATGAAGTGGCAGTTTTAAGGAAGCAACTTGACACTGTCATTCTCAAGAATTCAGTTCTTGAAGATCGTGTCACTCATCTAGATGGAGCATTGAAGGAATGTGTTAGGCAGCTAagacagacaagagaagagcaggaagagaaTATTTATGATGCTATTGCAAAAAAGACACAGGAATTGGTATCAACAAAAATTAAACTTGAGAATAAACTCACTGAGCTCCAGAACAAGTTAGATGCTTCAGAAGCCAGGTCTTGTATTGAATTTGATCTGTGTGAAAAGGTTGAATGTTTAGAGAAAGAAAACATGGCTCTTAGGTATGAGATCATAGTTAAATCAGAAGAGCTGGAAATCAGGACAATAGAGAGGGATCTAAGCACTCAAACTGCTGAGACAACTAGCAAGCAACATTTAGAAAGCATCAAGAAAGTAGCTAAGCTTGAGGCCGAGTGTCGGAGACTGAGAAGCATGGCTTCCAGAGCTTCCTTAGATCACAAGACCATTGCTCAGTCCTCATTTAGTGCTGAATCTCTAACAGATAGTCACTCAGACAACGGGGAGCGGCTTACTGCAGTGGAGATTGATGCACACAAGATGAGAGGCTCAGAGCTAAACAAGTGCGAGCCAAGTTGTTCTGACTCGTGGGCATCTGCTCTAATTGCCGAGCTTGATCAGTTCAAGAATGAGAAATGCAGAAAAACCCCATCCAGTTCTGTTAAAATTGATCTCATGGATGATTTTCTTGAAATGGAACGACTTGTTGCATTGCCTGAAACTAAGAATGAAAGCTTTGTTCAGGAGTCAGTTGTTTCCAATCAATGCATAAACAAAGAAGACTCTCTCAGAGCAGAGTTTGAGATCATGAATCAGCAAATGGATGAGCTAAAAGAAAAGTTAGAGAAGGTGGAAGCTGATAAAGCTGAACTAGAGATAGCTTTGATGAAAAGTGAAGAGTGTATTGAGGAGTCACAACTTCAGTTGAGGGAGGCAAAAGAGAAATTGGAGGAGTTTCAAAGAGAGTTAGAATTTGCCTACGAATCAAAGCAAAGGGTAGAAAATCACTTAATGGACATAGTAACTGAGGCTCAAACATTATCTGTGAAAGTTAAGTATTTAGAAGCTGAGGTTGATAAAGAGAGGGCTGTGTCAAGTGAAATTGCAATGAAGTATAGGGAGCAGGAGGAAGAGTTAGAAAGAAAATCTGTGAAGGTTGACATACTAGAAGCAGAGCTTGATAAGAAGAAGGATGAGTCGAATGAAATTGCAATTAAGTGTAAGAACCTGGAGAAAGAGTTAGAAAGAAAATCCACAAAGATTGACTTGTTAGAAGCAGATGTGGCTAAGGAGAAGGATGTGTCAGATAAAATTGCAAAAAAGTGTAAGGACATGGAGGAAGAGCTAGAAAGCAAATCTATAAAGGTTGGTTTATTAGAATCTGAGGTTGATAAAGAGAAGGCTGTGTTAGATGAAATTGCAAAAAAGTGTAAGAATCTGGAGGAAGAGTTAGAGAGCAAATCTGTAAAGGTTGAGTTATTAGAAGCAGAAGTTGGTAAGGAGAAGGCTGTCTCGGACGAAATTTCAAAGAATTGTAAGGACCTAGAGGAGAAGCTAGAAAGCAAATCTGCAAAGGTTGACTTGTTAGAAGAAGAGGTTCATAAGGAGATGGCTACTTCAGAAGAAATTGCAATGAAGTGTAGAGAATTGGAGGAAGAATTACTCAAGTCAACAGCTAGCTCATATGGAGAAAAGAAGATTAAGCAGGAGGACCTAGCACTAGCTGCTAGAAAACTTGTTGAGTGCCAGAAAACAATAGCATCTTTGGGGAATCAGTTGAAATCCCTGGCCACGCTGGAAGATTTCCTTATTGACACTTCTATCATTCCGGCAAGTCCATCACTCGTTGGTCAGGCTAGTGGGGACATGTGGAAGTTGCATTCAAATGGCACATATTCACCAAAAAGAGATTCCACTACTTCAAGGTTGGCTGATGGTAGCTCTTGTCCACCATTCTTCAACAAAAATGAGGAAACCTCGCAGCTTTCGTTGACTTCATCAACTTCATCCACGGCCTTGCCAAATCATGGCAGTTCTGAGAGGAGTCGAAATGGCTTTGCAAAATTTTTCTCTAGAACCAAGAGTGGAATCCGGCTAGAAATTTAG 2631 0.3968 MMDKKRWLWKRKSSEKSSGETESSGSVSSHSERYSDEQEPLKESPSRSNQSPDVTSKATAYAEDVNHSSLINEHLPEEVTFKYVPSTGIASDVSSEKDENGDNENIKDVKEGDLNDGLKNMSEKISAALVNVNVKEVLVQQHSKVAEEAIAGWEKAKNEVAVLRKQLDTVILKNSVLEDRVTHLDGALKECVRQLRQTREEQEENIYDAIAKKTQELVSTKIKLENKLTELQNKLDASEARSCIEFDLCEKVECLEKENMALRYEIIVKSEELEIRTIERDLSTQTAETTSKQHLESIKKVAKLEAECRRLRSMASRASLDHKTIAQSSFSAESLTDSHSDNGERLTAVEIDAHKMRGSELNKCEPSCSDSWASALIAELDQFKNEKCRKTPSSSVKIDLMDDFLEMERLVALPETKNESFVQESVVSNQCINKEDSLRAEFEIMNQQMDELKEKLEKVEADKAELEIALMKSEECIEESQLQLREAKEKLEEFQRELEFAYESKQRVENHLMDIVTEAQTLSVKVKYLEAEVDKERAVSSEIAMKYREQEEELERKSVKVDILEAELDKKKDESNEIAIKCKNLEKELERKSTKIDLLEADVAKEKDVSDKIAKKCKDMEEELESKSIKVGLLESEVDKEKAVLDEIAKKCKNLEEELESKSVKVELLEAEVGKEKAVSDEISKNCKDLEEKLESKSAKVDLLEEEVHKEMATSEEIAMKCRELEEELLKSTASSYGEKKIKQEDLALAARKLVECQKTIASLGNQLKSLATLEDFLIDTSIIPASPSLVGQASGDMWKLHSNGTYSPKRDSTTSRLADGSSCPPFFNKNEETSQLSLTSSTSSTALPNHGSSERSRNGFAKFFSRTKSGIRLEI 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 501 560 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 658 697 - -
Cca05g00953 876 Coils Coil 617 672 - -
Cca05g00953 876 SUPERFAMILY Tropomyosin 586 773 - -
Cca05g00953 876 Coils Coil 680 707 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 91 114 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 501 560 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 658 697 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 2 506 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 804 860 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 561 627 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 675 875 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 618 664 - -
Cca05g00953 876 Coils Coil 214 241 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 1 18 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 95 114 - -
Cca05g00953 876 Coils Coil 268 288 - -
Cca05g00953 876 Coils Coil 192 212 - -
Cca05g00953 876 Coils Coil 547 602 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 44 61 - -
Cca05g00953 876 Coils Coil 301 321 - -
Cca05g00953 876 Coils Coil 435 511 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 2 506 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 561 627 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 618 664 - -
Cca05g00953 876 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 675 875 - -
Cca05g00953 876 MobiDBLite consensus disorder prediction 1 61 - -
Cca05g00953 876 Pfam Filament-like plant protein, long coiled-coil 637 773 IPR008587 -
Cca05g00953 876 Pfam Filament-like plant protein, long coiled-coil 247 315 IPR008587 -
Cca05g00953 876 Pfam Filament-like plant protein, long coiled-coil 135 240 IPR008587 -
Cca05g00953 876 Pfam Filament-like plant protein, long coiled-coil 366 426 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00953 Cca-Chr5 25263750 25268819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00953 - - aprc:113847186 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00953 05 25263750 25268819 Cca05g00953 05 25263750 25268819 ECH