Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g00942 | ATGGCGGATAATATGctttccattttcttcctattccttctttctctcttCGCGTCGATCTCCGCACAAAAGGAGTTCGTGCTCACTTTGGACCGCTCCAACTTCTCCAACACCGTCACCAAACACAACTTCATCGTCGTCGAGTTCTACGCACCTTGGTGTGGCCACTGTATGAAGCTTGCTCCAGAGTATGAGAAAGCTGCTTCTATCTTGAGTAGCCATGATCCTCCGGTTCTTTTGGCTAAAGTTGATGCCAATGAAGAAAAGAACAGAGAAATTGCAAACGAATTTCAGGTTCAGGGATTTCCAACCATTAAGATTCTGAGAAATGGGGGCAAGGTTGTTCAAGATTACAAAGGTCCCCGTGAAGCAGACGGCATTGTTGACTATTTGAAGAAGCAAAGTGGTCCTGCAACAACAGAAATTAAATCTGCTGATGATGCTAAAGTTTTGATTGGCGAAAATAAAGTTGTTATTGTTGGGGTTTTCCCAAAATTTTCTGGGGAGGAGTTTGAGAACTTTATTGCATTGGCAGAGAAATTGCGTTCTGAATATGATTTTAGTCACACCTTGGATGCCAAACACCTTCCACGTGGAGAATCATCAGTGGCTGGGCCAATAGTTAGATTATTCAAGCCATTTGATGAACTTTTCGTTGACTTCCGGGATTTCCATTTCGAAGCTTTAGAGAAATTTGTTGAAGAATCTAGTGTCCCCGTTGTGACTGTCTTTAACAATGACCCAAGCAATCACCCCTTTGTTGTCAAATTCTTTGACAATCCACATGTGAAGGCAATGATGTTCATCAACTTCACTGCTGACACTGCTGATTCTCTCAAATTAAAATACCGTGAATCTGCCGAGCAATATAGACAACATGACATAAGCTTTCTAGTGGGAGACATTGAGGCTAGTCAAGGTGCATTCCAGTATTTTGGTCTTAAGGAAAACCAAGTGCCTTTAATCGTCATTCAACATAATGATGGGAAGAAGTTTCTGAAAACTAATTTGGAACCTGATCATATTGCAACTTGGTTGAAGGCATACAAGGATGGAAATGTTGAACCATATAAGAAGTCTGAACCTATTCCTGAAGTTAACAATGAACCTGTTAAAGTGGTAGTTGCAGACAGTCTTCATGACATTGTTTTCAACTCAGGGACAAATGTTTTGCTGGAGTTTTATGCTCCTTGGTGCGGTCATTGCAAAACGTTGGCTCCGATATTAGAGGAAGTTGCTGTTTCATATCAAAGTGACCCTGATGTTTTTATTGCAAAACTGGATGCAACTGCCAATGATATACCAAGGGAGACTTTTGATGTACAAGGTTATCCAACTATGTACTTCAGGTCATCAAGTGGAAAGATATCACAGTATGATGGAAATAGGACGAAGGAAGACATTATAGATTTTGTTGAAAAGAACCGAGATAAACTGGATCAGCAAGAACAAGTAAAAGATGAGCTTTGA | 1470 | 0.3966 | MADNMLSIFFLFLLSLFASISAQKEFVLTLDRSNFSNTVTKHNFIVVEFYAPWCGHCMKLAPEYEKAASILSSHDPPVLLAKVDANEEKNREIANEFQVQGFPTIKILRNGGKVVQDYKGPREADGIVDYLKKQSGPATTEIKSADDAKVLIGENKVVIVGVFPKFSGEEFENFIALAEKLRSEYDFSHTLDAKHLPRGESSVAGPIVRLFKPFDELFVDFRDFHFEALEKFVEESSVPVVTVFNNDPSNHPFVVKFFDNPHVKAMMFINFTADTADSLKLKYRESAEQYRQHDISFLVGDIEASQGAFQYFGLKENQVPLIVIQHNDGKKFLKTNLEPDHIATWLKAYKDGNVEPYKKSEPIPEVNNEPVKVVVADSLHDIVFNSGTNVLLEFYAPWCGHCKTLAPILEEVAVSYQSDPDVFIAKLDATANDIPRETFDVQGYPTMYFRSSSGKISQYDGNRTKEDIIDFVEKNRDKLDQQEQVKDEL | 489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g00942 | 489 | Pfam | Thioredoxin-like domain | 163 | 347 | - | - | |
| Cca05g00942 | 489 | Gene3D | Glutaredoxin | 365 | 479 | - | - | |
| Cca05g00942 | 489 | CDD | PDI_b'_family | 258 | 350 | - | - | |
| Cca05g00942 | 489 | Coils | Coil | 472 | 489 | - | - | |
| Cca05g00942 | 489 | ProSitePatterns | Thioredoxin family active site. | 46 | 64 | IPR017937 | - | |
| Cca05g00942 | 489 | SUPERFAMILY | Thioredoxin-like | 27 | 137 | IPR036249 | - | |
| Cca05g00942 | 489 | Gene3D | Glutaredoxin | 135 | 239 | - | - | |
| Cca05g00942 | 489 | PANTHER | PROTEIN DISULFIDE-ISOMERASE | 8 | 483 | - | - | |
| Cca05g00942 | 489 | TIGRFAM | ER_PDI_fam: protein disulfide isomerase | 27 | 481 | IPR005792 | GO:0003756 | |
| Cca05g00942 | 489 | Gene3D | Glutaredoxin | 240 | 364 | - | - | |
| Cca05g00942 | 489 | TIGRFAM | pdi_dom: protein disulfide-isomerase domain | 375 | 475 | IPR005788 | GO:0003756 | |
| Cca05g00942 | 489 | TIGRFAM | pdi_dom: protein disulfide-isomerase domain | 31 | 134 | IPR005788 | GO:0003756 | |
| Cca05g00942 | 489 | Gene3D | Glutaredoxin | 20 | 134 | - | - | |
| Cca05g00942 | 489 | ProSiteProfiles | Thioredoxin domain profile. | 357 | 477 | IPR013766 | - | |
| Cca05g00942 | 489 | SUPERFAMILY | Thioredoxin-like | 236 | 368 | IPR036249 | - | |
| Cca05g00942 | 489 | ProSitePatterns | Thioredoxin family active site. | 391 | 409 | IPR017937 | - | |
| Cca05g00942 | 489 | Pfam | Thioredoxin | 372 | 473 | IPR013766 | - | |
| Cca05g00942 | 489 | Pfam | Thioredoxin | 27 | 133 | IPR013766 | - | |
| Cca05g00942 | 489 | CDD | PDI_a_PDI_a'_C | 370 | 472 | - | - | |
| Cca05g00942 | 489 | CDD | PDI_b_family | 140 | 235 | - | - | |
| Cca05g00942 | 489 | CDD | PDI_a_family | 28 | 131 | - | - | |
| Cca05g00942 | 489 | PRINTS | Thioredoxin family signature | 45 | 53 | - | - | |
| Cca05g00942 | 489 | PRINTS | Thioredoxin family signature | 53 | 62 | - | - | |
| Cca05g00942 | 489 | PRINTS | Thioredoxin family signature | 98 | 109 | - | - | |
| Cca05g00942 | 489 | SUPERFAMILY | Thioredoxin-like | 140 | 239 | IPR036249 | - | |
| Cca05g00942 | 489 | ProSiteProfiles | Thioredoxin domain profile. | 16 | 136 | IPR013766 | - | |
| Cca05g00942 | 489 | PANTHER | PROTEIN DISULFIDE ISOMERASE | 8 | 483 | - | - | |
| Cca05g00942 | 489 | SUPERFAMILY | Thioredoxin-like | 336 | 477 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g00942 | Cca-Chr5 | 25176050 | 25181846 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g00942 | K09580 | - | gmx:100788702 | 855.899 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g00942 | 05 | 25176050 | 25181846 | Cca05g00942 | 05 | 25176050 | 25181846 | ECH |