Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00939 ATGTCTTCCGCCGCCGCCTCCACCCGCTCCTCCCATAGACCCTCCGTCTCGCCGCTCCGCTCGCGGAAATCCCCGGCGGCAGCCTCCAAACCCGCCGCAAGGCCTACCActccgtcctcctcctccaccgcctcGAGGTCGTTGTCCAAGGCCTCCGTCTCCACAGCCGCCGCGTCGGACGTCAGCAAGGCCAAGGAGAATGTCACTGTCACTGTCCGGTTCCGACCCCTCAGTGGGAGAGAAATTAATAAAGGGGACGAAGTGGCGTGGTATGCGGATGGGGATCATATAGTTAGAAATGAGTACAATCCTTCCCTTGCTTATGGCTTTGATAAGGTATTTGGGCCAGCAACGACAACTCGGCATGTTTATGATGTGGCTGCTCAGCAAGTTGTTAGTGGTGCTATGGAAGGGATTAACGGTACCGTTTTTGCATATGGTGTTACTAGTAGTGGAAAGACTCATACCATGCATGGGGAGCAAAAATCACCTGGAATTATCCCACTTGCAGTGAAGGATGTCTTCAGTATTATACAAGAGACTCCTGGACGAGAATTCTTACTACGTGTCTCATATCTTGAGATTTACAATGAGgtcatTAACGACTTGCTGGATCCAACTGGGCAGAATCTAAGAATACGAGAGGATGTTCAGGGTACTTATGTTGAAGGAATCAAAGAGGAAGTTGTGCTATCCCCTGCTCATGCCCTTTCTTTGATTGCTACAGGAGAAGAGCATAGACATGTGGGTTCAAATAATTTCAATCTATTTAGCAGTCGAAGCCACACTATTTTCACCTTGACTATTGAAAGCAGTTCGCGAGGGGAAAATCTAGGGGAAGAGGATGTAACATTGTCCCACTTGCACTTAATTGATCTTGCAGGTTCTGAAAGTTCTAAAACCGAAACAACTGGTTTGCGGAGGAAAGAAGGTTCCTATATTAATAAAAGCTTGCTTACTCTTGGAACGGTGATCGCTAAATTAACAGATGGAAAGGCAACTCATATTCCTTATCGAGATTCAAAGCTCACTCGGTTGTTACAATCATCCCTCAGTGGCCATGGACGGATTTCTCTCATTTGCACAGTTACTCCTGCTTCTAGCAGTAGTGAAGAGACACACAACACATTAAAGTTTGCACACCGGAGTAAGCATGTTGAAATCAAAGCTTCTCAAAATAAGATTATGGATGAGAAGTCTCTGATCAAGAAGTATCAGAGGGAAATTTCTGAGTTAAAGCAGGAGCTTCAGCAACTGAAGCGTGGAATGGTTGAGAATCCCAATATGGCCACATCTTCACAAGAAGATCTGGTTAATTTGAAGCTTCAGCTTGAAGCTGGTCAATCCAAATTGAAGTCGAGATTGGAAGAGGAGGAACAGGCTAAAGCAGCATTGATGGGAAGAATTCAGCGACTAACCAAATTAATCTTAGTTTCTACAAAGAATGCAATGACTTCAAGCATTCCAGAAAGGCCTAGCCATAGGCGAAGACATTCTTTTGGGGAAGATGAGCTAGCATATTTACCAGATCGAAAACGTGAGTCCTGGGTTAATGATGACACAGGGAGCCATGCTTCAGTTCCTTCAGCAGAAGAAAAGGATGACATTGCAAATTTAGATGAATTGGTGAAGGATTATAAAAGAAGCAAAAGGCGTGGAATGCTTGGTTGGTTGAAGCTGAGAAAACCTGATAACGGTGATGGATCATTGCCAAATGTTGATAGTGAGGGCTCTGCAAATGGTTCACCTGCATCTGCTTCAAAATTAACTCCAAACAGAGTCATGCTTCATGTCATGAAAGATTCACGCAGGAATTCAGTTAGCAAAAAGGATAATGCTTCAGCTCTCAATTCTTTTCCAGGAAGAACTCAAGCAGGTGATTTGTTCGGTGTAACTGTTGGTGGTCGTCAACTTCCTCCGACTGGGACTACTGTAACTGATCAAATGGATCTTCTGCGTGAACAAGTAAAAATGTTGGCTGGAGAGGTGGCATTTTGTATTAGTTCTCTGAAAAGACTGTCTGAACAGGCAGCTAACAAGCCTGAAGATATTCAACTACAAGAAGACATGCACAAGTTGAAGGGTGAAATTAGCCAAAAGAAGAATCAAATCCGTATCCTAGAGCAACGGATGATTGGATCACTAGGACATGCACCAAGTAACAACGAAATGTCTCAGGCTCTATCCAAGCTTACCACTGAACTCAATGAAAAGATTTTTGAACTTGAGATCAAGTCTGCAGATAACAGGATACTTCAAGAGCAACTGCAATTGAAGAATTCAGAGAATGTTGAGATGCAAGAGACAATTATTTCACTAAAGAAACAGATAAATTTGTTGTTGGATAAAACCTCAACTAATTTTCAGCACGTTGCTGCTAGTGAGACTGGCTATTCTAGGGATGTGTTGGGAAAGACCGATGAAGCACGGTCAGTCAAAAACTTGAATGCAACAGTCTCTGAAGCGCATCCGAAGCAAGGAAGTAGTGATCCAAATATAAATTCTCAAATTCTTATGCAGGCAGCTGAAATAGATAATTTAAGGCAAGAGAATGCGAGATTGGTGGAAGAGAAAGACGGGCTTGAAATTCAAAGTCATAAACTTGCAGAAGAAGCTTCATATGCAAAAGAGTTGGCAGCAGCTGCAGCAGTTGAACTCCGAAACCTGGCTGAAGAAGTGACTAAACTTACTTATGAAAATGCAGAACTGACTGGTGATCTGGCAGCTGCAAAAGTGGCCTCTTGCAAATCCAGCTTTTCTCCAACGTCTTCACAAAATATAAATAATAGTTTTCAACGAGATGCGCAATCGAAAAAGCTGGGGAATGAAGTTCGTATTGAGGAGTTGCAGAAGGACCTTAATGCTAGATTCCAAAAAGAAGCTGCATTAGAAGCAGCTCTATCTATGAAAGTTGAAATAGCTGACCTGAGAAGGACACTAGATGAAATAAAACACCAAAAACAAGATTTGGAATATGAGCTTACAAACATGCAGATGTTGGTAGCCAAGATGAGAAAGCATGGCATTAATGGTGAGGATAAGTCAACAGTTCATATGGCTAATGATGTACAAACCAAGGTTAAAAATGGACTTCCAACAACTAATGGCTACTCTCGTAGAAAACAATGCAAAGAGGATGAAATTTTAGGAAGCATGGAAGATATGATTGCATTAGAAGAACTGAGGGCTAATTATCAAAGAGAAAGAAGAAGATGCAAAGAACTTGAAAGTCATATTTCTATATTGAAGGGTGAAGATATCGCTGGTCTGGATGTCATGGCTCTTGAAGAACTTCAAAACCTTCATATTGAGGCAATAACAAAGATTTGCCATGCAAAGTATGCAAATCAAAACTTGTAA 3360 0.4182 MSSAAASTRSSHRPSVSPLRSRKSPAAASKPAARPTTPSSSSTASRSLSKASVSTAAASDVSKAKENVTVTVRFRPLSGREINKGDEVAWYADGDHIVRNEYNPSLAYGFDKVFGPATTTRHVYDVAAQQVVSGAMEGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLAVKDVFSIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRIREDVQGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLFSSRSHTIFTLTIESSSRGENLGEEDVTLSHLHLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIAKLTDGKATHIPYRDSKLTRLLQSSLSGHGRISLICTVTPASSSSEETHNTLKFAHRSKHVEIKASQNKIMDEKSLIKKYQREISELKQELQQLKRGMVENPNMATSSQEDLVNLKLQLEAGQSKLKSRLEEEEQAKAALMGRIQRLTKLILVSTKNAMTSSIPERPSHRRRHSFGEDELAYLPDRKRESWVNDDTGSHASVPSAEEKDDIANLDELVKDYKRSKRRGMLGWLKLRKPDNGDGSLPNVDSEGSANGSPASASKLTPNRVMLHVMKDSRRNSVSKKDNASALNSFPGRTQAGDLFGVTVGGRQLPPTGTTVTDQMDLLREQVKMLAGEVAFCISSLKRLSEQAANKPEDIQLQEDMHKLKGEISQKKNQIRILEQRMIGSLGHAPSNNEMSQALSKLTTELNEKIFELEIKSADNRILQEQLQLKNSENVEMQETIISLKKQINLLLDKTSTNFQHVAASETGYSRDVLGKTDEARSVKNLNATVSEAHPKQGSSDPNINSQILMQAAEIDNLRQENARLVEEKDGLEIQSHKLAEEASYAKELAAAAAVELRNLAEEVTKLTYENAELTGDLAAAKVASCKSSFSPTSSQNINNSFQRDAQSKKLGNEVRIEELQKDLNARFQKEAALEAALSMKVEIADLRRTLDEIKHQKQDLEYELTNMQMLVAKMRKHGINGEDKSTVHMANDVQTKVKNGLPTTNGYSRRKQCKEDEILGSMEDMIALEELRANYQRERRRCKELESHISILKGEDIAGLDVMALEELQNLHIEAITKICHAKYANQNL 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00939 1119 Gene3D Kinesin motor domain 57 418 IPR036961 -
Cca05g00939 1119 MobiDBLite consensus disorder prediction 1 62 - -
Cca05g00939 1119 Coils Coil 744 783 - -
Cca05g00939 1119 MobiDBLite consensus disorder prediction 33 62 - -
Cca05g00939 1119 Coils Coil 886 906 - -
Cca05g00939 1119 Coils Coil 1055 1085 - -
Cca05g00939 1119 Pfam Kinesin motor domain 73 386 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 MobiDBLite consensus disorder prediction 559 592 - -
Cca05g00939 1119 Coils Coil 837 871 - -
Cca05g00939 1119 MobiDBLite consensus disorder prediction 571 589 - -
Cca05g00939 1119 ProSitePatterns Kinesin motor domain signature. 286 297 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca05g00939 1119 ProSiteProfiles Kinesin motor domain profile. 67 386 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 PANTHER CENTROMERE PROTEIN E 52 1105 - -
Cca05g00939 1119 Coils Coil 388 422 - -
Cca05g00939 1119 SMART kinesin_4 65 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 MobiDBLite consensus disorder prediction 1 18 - -
Cca05g00939 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 421 IPR027417 -
Cca05g00939 1119 CDD KISc_CENP_E 67 386 - -
Cca05g00939 1119 Coils Coil 448 475 - -
Cca05g00939 1119 Coils Coil 966 1000 - -
Cca05g00939 1119 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 52 1105 - -
Cca05g00939 1119 PRINTS Kinesin heavy chain signature 138 159 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 PRINTS Kinesin heavy chain signature 252 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 PRINTS Kinesin heavy chain signature 287 305 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 PRINTS Kinesin heavy chain signature 336 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00939 1119 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00939 Cca-Chr5 25114855 25140284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00939 63 712 Miscellaneous Gene Families AT5G06670 59.663 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00939 K11498 - gmx:100817131 1850.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00939 05 25114855 25140284 Cca05g00939 05 25114855 25140284 ECH