Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00934 ATGGTGTACGTAGTGATGAAGGTGTTGATGGGGTTTTGGTGTTCCCTTGCACTACTTCTAATGGTAGCTTTTGGTATTGTCCATGGTGGCAGTGTCACCTATGACAGAAGATCATTGATCATTGATGGTCAACATAAAATCCTCTTCTCTGGTTCAATTCACTATCCTCGTAGCACTCCTAAGATGTGGTCTGATTTAATTGCCAAAGCCAAGGAAGGAGGATTAGACGTCATAGATACTTATGTGTTTTGGAACCTTCACGAACCACACAGAGGCCTGTATAAATTTAATGGAAAGCGTAACATAGTGAGATTCATTCAAGAAATCCAATCACAGGGTTTATATGTGATCCTCAGAATTGGACCATTCATTGAAAGTGAATGGACTTACGGGGGTCTACCATTTTGGTTGCATGATATTCCCGGTATTACTTTTAGAACAGATAACGAGCCATTCAAGTTTTACATGCAAAATTTCACTGCAAAAATAGTCAACATGATGAAATCAGCTAATCTTTTTGCATCACAAGGAGGACCCATCATACTATCACAGATTGAAAATGAGTACAGTTTGGTTGAAGGGGCGTTTCACAAGAATGGAGTTAAATATATTCGCTGGGCTGCAAAAATGGCCGTGGGACTCCAAACTGGAGTGCCTTGGGTAATGTGCAGGCAAGATGATGCTCCTGATCTTGTGATCAACACATGCAATGGTCTGAGATGCGGGGAAACATTTAAAGGGCCTAACTCACCTAACAAGCCTTCACTATGGACAGAGAATTGGACATCGAGATATCCAACCTTTGGTGAAAAAACACGATTAAGATCGGCTGAAGACATTGCATATAATGTTGCCTTGTTCATTGCAAAGAATGGAAGCTTTGTCAACTACTACATGTACCATGGGGGGACAAATTTTGACAGAACAGCTTCTGCTTTTGTAACAACAGCTTATTATGATGATGCACCATTAGATGAATATGGTTTGGTTAAGCAACCAAAATGGGGGCATCTAAAGGAGTTACATACTGTAATTAAGAATTGCTCTGAGCCTTTACTGTATGGAACACAAACTACGTTGAACTTGGGTGCACAACAAGAAGCTTATGTTTTCAAAAAGAACTCAACATCTTGTGTTGCCTTCTTGGGAAATAGTGCTCATATAGATGCCACAATCCAATTTCAAAATGTTACATATCAGTTACCCAGACAATCAATCAGTATCCTACCAGACTGCAAGAATGTTGCCTTCAACACAGCAAAGGTAAACACACAACATCTAATGAGAGCAATGAAATCCCAGTTACAGTTCAATTCAGCTGAAAAGTGGAAAGTGCACATAGATGCCATCCCTAACTATGTTGATACTTCATTAAGAGAAAATAAAGTATTGGATCATTTCAGCATAACAAAAGATACTTCTGATTATCTGTGGTACACTTCTAGCATACATGCTCAATCTCCCAATACTCAATCAGTTCTCAGTGCATTTAGCAGAGGACATGTTTTGTATGCATTTGTCAATGGTGTATTAGTAGGTTCTACACATGGTAGTATCAAAAATACACATTGCAACTTGGAGATCAAGATCAATTTGGGAATGGGGGAGAACAATATTTCCTTACTCAGTGCAACAGTTGGATTACCGGATTCGGGAGCACACCTAGAACATAAAACAGCTGGTTTGTATGATGTGAAAGTTGATGGCAGAGATCTCACAAGTCAATCATGGGGATATCAGGTTGGGTTGTTGGGAGAAAAATTGAAAATATATACAAGCACTGGATTACGTAATGTTTACTGGGGAAATCTTGGAAACTTTGCTCAACCACTCACATGGTATCAGACCACATTTGATGCACCAGCTGGTAACGATCCTGTAGCACTCAACCTTGGTTCAATGGGAAAGGGTCAAATTTGGGTTAATGAACATAACATTGGTCGCTATTGGGTATCTTTTCACACGCATGAGGGAACTCCTACACAACAATGGTATCACATACCTCGATCTTTCTTGAAACCTGCTGGTAACCTTCTAGTTCTACTCGAAGAAGAAAAGGGAAACCCACTAGGAATAACTCTGGACACAGCTGTTTACACTATGGTGTGA 2109 0.3988 MVYVVMKVLMGFWCSLALLLMVAFGIVHGGSVTYDRRSLIIDGQHKILFSGSIHYPRSTPKMWSDLIAKAKEGGLDVIDTYVFWNLHEPHRGLYKFNGKRNIVRFIQEIQSQGLYVILRIGPFIESEWTYGGLPFWLHDIPGITFRTDNEPFKFYMQNFTAKIVNMMKSANLFASQGGPIILSQIENEYSLVEGAFHKNGVKYIRWAAKMAVGLQTGVPWVMCRQDDAPDLVINTCNGLRCGETFKGPNSPNKPSLWTENWTSRYPTFGEKTRLRSAEDIAYNVALFIAKNGSFVNYYMYHGGTNFDRTASAFVTTAYYDDAPLDEYGLVKQPKWGHLKELHTVIKNCSEPLLYGTQTTLNLGAQQEAYVFKKNSTSCVAFLGNSAHIDATIQFQNVTYQLPRQSISILPDCKNVAFNTAKVNTQHLMRAMKSQLQFNSAEKWKVHIDAIPNYVDTSLRENKVLDHFSITKDTSDYLWYTSSIHAQSPNTQSVLSAFSRGHVLYAFVNGVLVGSTHGSIKNTHCNLEIKINLGMGENNISLLSATVGLPDSGAHLEHKTAGLYDVKVDGRDLTSQSWGYQVGLLGEKLKIYTSTGLRNVYWGNLGNFAQPLTWYQTTFDAPAGNDPVALNLGSMGKGQIWVNEHNIGRYWVSFHTHEGTPTQQWYHIPRSFLKPAGNLLVLLEEEKGNPLGITLDTAVYTMV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00934 702 Gene3D - 586 700 - -
Cca05g00934 702 PANTHER BETA-GALACTOSIDASE 16 14 698 - -
Cca05g00934 702 SUPERFAMILY Galactose-binding domain-like 576 700 IPR008979 -
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 293 308 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 312 328 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 609 623 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 PRINTS Glycosyl hydrolase family 35 signature 636 652 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 SUPERFAMILY Galactose-binding domain-like 406 562 IPR008979 -
Cca05g00934 702 Pfam Beta-sandwich domain in beta galactosidase 352 422 IPR041392 -
Cca05g00934 702 SUPERFAMILY (Trans)glycosidases 29 348 IPR017853 -
Cca05g00934 702 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Cca05g00934 702 PANTHER BETA-GALACTOSIDASE RELATED 14 698 IPR001944 GO:0004553|GO:0005975
Cca05g00934 702 Pfam Glycosyl hydrolases family 35 38 343 IPR031330 -
Cca05g00934 702 Gene3D Glycosidases 30 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00934 Cca-Chr5 25004730 25013594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00934 16 696 Glycoside Hydrolase AT5G63800 58.680 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00934 - - gmx:100780980 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00934 05 25004730 25013594 Cca05g00934 05 25004730 25013594 ECH