Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00933 ATGCCACCTTCCCCTTCCTTCCCCTCAGCCTCAGAGAACCGAACCAAATGGAGGAAGAAGCGCCGGAGGGAGTCCCACAAGCGCCATGCCGACCGCGACGATTCCGACCAGGACGACCGTCCCGACGAAGGCGATTCCGACGACCAATTCCGCAGGCCTAACGCGCGCGTGGAGATCGAGGCGGTGTCGCGCGACGGACTCCAGATTTCGCAGTTCCCGCCGGCGATCAAGCGCGCCGTTATCCGACCTCACTCCGCGGTGGCGGCGATTGCGGCGCTGGAGTCCGGCAGGGGGCAGTCGCAGCACGAGGTTCCGGTTCTGGAGAATGTGTCGCACGGGCAGCTTCAGGCGGTGTCGGCTGTGACCGCCGACTGCCTTGGCGGCGATGGCTCGGCCTTCGTTGCTGCTCCGCCGCCGGTTTTGAGAGGCTCCGGCGTCGTTAAGCGGTTCGGGAGTAGGGTTCTTGTAGTTCCTATGCACTCAGATTGGTTTTCACCAGCCACAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCGACAGATCATACGCCAGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCGGGGAAGAAGATTACGGTCTCTTGCCTGGGATTGTCAGTTGGTGTTGGAAATGAAGATTTAACTCGAATTGTCCGGTTCCTTGAGCACTGGGGAATTATCAATTACTGTGCTCGGTGCCCAAGTCACAAGTATCCTGACAATGAGACTTGCCTGAAGGAGGAGAAAAGTGGTGCAATATGTGTGCCATCAGTGGCTTTAAGATCCATAGATAGTTTGATTGAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGACGAAATTTATTCATCTCGAACAGTGCACAATACTGATATTTCTGATTTGGACGGGAGAATAAGAGAGCATCTATCAGAAAACCATTGCCATTATTGTTCTCGCTCTCTTCCTGTTGCATACTACCAATCACAAAAAGAGGTTGACATTTTACTCTGCGCTGATTGCTTTCATGATGGGAGATTCGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCTACTACAGATTATGGTGATCCAGACGGGGATAGTTGGACTGAACAGGAGACTTTGCTGCTGCTTGAAGCAGTGGAGGTTTACAATGACAATTGGAATGAAATTGCTGATCATGTTGGTACGAAGTCAAAAGCACAATGCATTCTTCATTTCCTCCGTCTACCTGTGGAAGATGGGAAATTGGAAAATATGAATGTTTCAAGCTTGTCTTTGTCATCCAATGTGATGAATCAAGATGATAATGGAAGATTGCGTTGTTGCTCAAATGGGTATTCTGCAGGACCTGTACATTACAGCCGAGATTCTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCGGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCATGCAGCATTAGCTGCTTTGTCAGGGAATAATTCTGGGAGCACTACACATATAGAAGCACCGGAAAATGTTAATAGGACAAATTCAGAAATCATGCATAGTAGAGATGGTGGCCATCATGGAGAGTTTGCGAACTCAGATCAGAAAAACGGTAGTTATGAGGACAAGGCAAAAGTACTTGGTTCATGTGCTCAAAATGATGGTGGGTCGACCCTGTTATCTGCTGAGAAAGTCAAAGATGCTGCAAAAGTAGGCCTCTCTGCTGCAGCAATGAAAGCTAAGTTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGACTATGTGCTAATATTGTTAATAATAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACCCAGTTGATGAAAGAATGCGAACAAGTTGAGAAGGTGAGGCAGAGGTATGCTTCTGAACGGTCGCATGTTGTATCAGCACGTCTTGGAAATGGTGGAACCACTCCAATGAATGTAGCGGGTGTTGGTCCTTCCATGGCTAACAATAATAGCAACAGTAGGCAACAAATGGTTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGTTATGGTAACAGCCAACCAGTTTATCCACACATGTCCTTTGCCCCACGGCCTTCAATGTTTGGGTTAGGGCAAAGGTTGCCCCTTTCAATGATACAACAATCGCAATCACAATCACAATCAGCATCTTCAAATCCAATGTTCAATGGTCCCGGTGATGTTCAGCCTAATCCCAATCATTCATTTTCGAGGCCTGTGTCAAGGACTAACTCTGGTTTAGGTTAA 2325 0.474 MPPSPSFPSASENRTKWRKKRRRESHKRHADRDDSDQDDRPDEGDSDDQFRRPNARVEIEAVSRDGLQISQFPPAIKRAVIRPHSAVAAIAALESGRGQSQHEVPVLENVSHGQLQAVSAVTADCLGGDGSAFVAAPPPVLRGSGVVKRFGSRVLVVPMHSDWFSPATVHRLERQAVPHFFSGKSTDHTPEKYMECRNYIVARYMEDPGKKITVSCLGLSVGVGNEDLTRIVRFLEHWGIINYCARCPSHKYPDNETCLKEEKSGAICVPSVALRSIDSLIEFDKPKCKFKADEIYSSRTVHNTDISDLDGRIREHLSENHCHYCSRSLPVAYYQSQKEVDILLCADCFHDGRFVTGHSSIDFIRVDSTTDYGDPDGDSWTEQETLLLLEAVEVYNDNWNEIADHVGTKSKAQCILHFLRLPVEDGKLENMNVSSLSLSSNVMNQDDNGRLRCCSNGYSAGPVHYSRDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSGNNSGSTTHIEAPENVNRTNSEIMHSRDGGHHGEFANSDQKNGSYEDKAKVLGSCAQNDGGSTLLSAEKVKDAAKVGLSAAAMKAKLFADHEEREIQRLCANIVNNKLKRLELKLKQFAEIETQLMKECEQVEKVRQRYASERSHVVSARLGNGGTTPMNVAGVGPSMANNNSNSRQQMVSASSSQPSISGYGNSQPVYPHMSFAPRPSMFGLGQRLPLSMIQQSQSQSQSASSNPMFNGPGDVQPNPNHSFSRPVSRTNSGLG 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00933 774 ProSiteProfiles Myb-like domain profile. 379 422 IPR001005 -
Cca05g00933 774 Pfam SWIRM domain 158 243 IPR007526 GO:0005515
Cca05g00933 774 Gene3D - 376 426 - -
Cca05g00933 774 Coils Coil 611 638 - -
Cca05g00933 774 SMART sant 376 424 IPR001005 -
Cca05g00933 774 MobiDBLite consensus disorder prediction 532 552 - -
Cca05g00933 774 MobiDBLite consensus disorder prediction 676 704 - -
Cca05g00933 774 SUPERFAMILY Homeodomain-like 377 430 IPR009057 -
Cca05g00933 774 MobiDBLite consensus disorder prediction 731 774 - -
Cca05g00933 774 Pfam SWIRM-associated region 1 586 659 IPR032451 -
Cca05g00933 774 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 50 773 - -
Cca05g00933 774 SUPERFAMILY Homeodomain-like 154 246 IPR009057 -
Cca05g00933 774 ProSiteProfiles Zinc finger ZZ-type profile. 317 371 IPR000433 GO:0008270
Cca05g00933 774 CDD SANT 379 421 IPR001005 -
Cca05g00933 774 Pfam Myb-like DNA-binding domain 379 421 IPR001005 -
Cca05g00933 774 Gene3D - 161 247 IPR036388 -
Cca05g00933 774 ProSiteProfiles SANT domain profile. 375 426 IPR017884 -
Cca05g00933 774 PANTHER SWI/SNF COMPLEX-RELATED 50 773 - -
Cca05g00933 774 MobiDBLite consensus disorder prediction 1 54 - -
Cca05g00933 774 ProSiteProfiles SWIRM domain profile. 155 252 IPR007526 GO:0005515
Cca05g00933 774 MobiDBLite consensus disorder prediction 534 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00933 Cca-Chr5 24996764 25002886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00933 322 418 EF-hand Containing Proteins AT3G07740 33.019 6.99e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00933 K11649 - gmx:100792929 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00933 05 24996764 25002886 Cca05g00933 05 24996764 25002886 ECH