Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00913 ATGGCAACGGTCGATGAGATTCACAGTGCACAAAGGGCAAAAGGCCCAGCAAGTATCTTGGCAATAGGCATTGCCACTCCTCAAAATTGTGTGGAACAAAGTACCTATCCTGACTACTATTTTCGTATCACAAATAGTGACCACAAGATCGAACTTAAAAATAAATTCAAACGCATGTGCGAAAATTCAATGATTAAGAAGCGATACATGCACTTGACAGAAGAGATCCTAAAGAAGAATCCCAATATTGGTGAGCACATGGCACCTTCATTGGATGCAAGGCAAGAGTTGGTGGTTATGGAAGTACCAAAGTTAGGAAAGGAGGCAGCAATGAAGGCCATTAAGGAATGGGGTGAACCTAAGTCTAAAATCACCCACCTCATATTTTGCACCACAAGTGGTGTGGACATGCCTGGTGCTGACTACCAACTCACAAAGCTCTTAGGCCTTTGCCCAAATGTGAAACGTTATATGATATACCAACAAGGTTGCTTTGCTGGTGTTATGGTACTTCGTTTGGCTAAAGATTTGGCTGAAAATAATAAAGGTGCTCGTGTGTTGATAGTTTGCTCAGAAAACACCATATTCACTTTTCGTGGCCCAAGTGACACTCATGTTGATAACCTTGTGGGGCAATCACTATTTGGAGATGGTGCAACAGCTGTCATTATTGGTTCAGACATAATACCAAAGGTTGAGAAGCCTTTGTTTCAATTAGTGTGGACTTCACAAACAATCATCCCTGATAGTGAAGGAGCCTTGGAATTGCATCTTCGTGAAGCTGGGTTGACATTCCATCTTTTGAAGGAAGTTCCAAATCTTATTTCAAACAACATTGAAAATGCTTTGTGTGAAGCCTTTCAACCATTGAACATCTCTGATTATAACTCCATATTTTGGATAGTACATCCTGGTGGGCGAGCAATTCTAGACCAAATTGAGGCTAAGTTAGGTTTAAAGGCAGAAAAAATGCGAGCCAGTCGACACATCCTTAGTGAGTATGGTAATATGGCAAGTGTTTGTGTGTTTTTCATCATGGATGAAATGAGGAGGAAGTCAAAAGAAAATGGACTTTCCACAACAGGTGAAGCCGTGAAGGGTTTGACTGGGGTGTACTATTTGGCTTTGGACCTGGAATCACTTTAG 1146 0.4136 MATVDEIHSAQRAKGPASILAIGIATPQNCVEQSTYPDYYFRITNSDHKIELKNKFKRMCENSMIKKRYMHLTEEILKKNPNIGEHMAPSLDARQELVVMEVPKLGKEAAMKAIKEWGEPKSKITHLIFCTTSGVDMPGADYQLTKLLGLCPNVKRYMIYQQGCFAGVMVLRLAKDLAENNKGARVLIVCSENTIFTFRGPSDTHVDNLVGQSLFGDGATAVIIGSDIIPKVEKPLFQLVWTSQTIIPDSEGALELHLREAGLTFHLLKEVPNLISNNIENALCEAFQPLNISDYNSIFWIVHPGGRAILDQIEAKLGLKAEKMRASRHILSEYGNMASVCVFFIMDEMRRKSKENGLSTTGEAVKGLTGVYYLALDLESL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00913 381 PANTHER CHALCONE SYNTHASE 3 3 366 - -
Cca05g00913 381 SUPERFAMILY Thiolase-like 235 363 IPR016039 GO:0016746
Cca05g00913 381 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Cca05g00913 381 CDD CHS_like 16 360 - -
Cca05g00913 381 Pfam Chalcone and stilbene synthases, N-terminal domain 5 227 IPR001099 -
Cca05g00913 381 Pfam Chalcone and stilbene synthases, C-terminal domain 238 364 IPR012328 -
Cca05g00913 381 Gene3D - 236 371 IPR016039 GO:0016746
Cca05g00913 381 PIRSF PKS_III 2 369 IPR011141 GO:0009058|GO:0016747
Cca05g00913 381 Gene3D - 1 235 IPR016039 GO:0016746
Cca05g00913 381 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 3 366 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00913 Cca-Chr5 24583257 24585188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00913 153 354 Miscellaneous Gene Families AT3G52160 27.805 8.98e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00913 K00660 - gmx:100792581 593.964