LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00911	ATGGATcaacaccacttcctccaccaccaccaccactaccaccaccctcaagaccaccgcaccacccgctacaacctccctcctccgcccccggcgccgcccccgccactaccctaccaccaccaccaccgcacccctccccaaccccaaacccaaccccaacaacaacagcagcagcaacaacaaccacaacaattccccttcaccactccctccaccgccaccgccgctgccacctaccctcaccaccaccaccgccacctcgacgacgaccctccctctctcccctacgacctcctccctccccgccgcaccgccctcccCTGGAACCCTAACCCTAGAACCTCCCTCCCCGACGATTTCGaccgccaattccaccgccaccgccctcccccgccgcAAATCGACCCTCTCCGCTAcgatcccgaccgcgaccgcgccgatccctacgaccgcaacTCCGCCGAACAATCGTTCGCGTGGGGCGGCGCCGGTAACTACCACGGCGACGGCGATCCCGACCCCGGCTACGTCCGCGTGTACAGCGTGGAATGCGACGCTGACGTGGCGGGGCGAGGGTCCAAGAGGTGGTTGATGAGTGACAGAGAGAGGGGGAGAGAGTTGCACGAGTCTTCTTCTAGTTTAGTGAATAGTACTAACAATGAGAAATATTATCACCATGCCTCTGATTTGGGTAGGTTTAGTAGAGGGAACAATGGTAGAGAGTGTGCTCATGAATTCGCGCGCACCCCTCCTAAGAAACAGGTGCAGAAGAAGAGTGCGCTTCTTAGGATTCAGACGGTTAAGCCGAGTAACCATAGGAACCGTGAGGTTGATCAGTTAAGGTACCAGGGTTATGGTTCTGAGTTTTTCAGGGGGAAGGAGCAGTATTTGGGGCATGGGGTGAAGGGGGAGGAGAGAGATGAGAGAGAGGGGAGTCCTGTTGAGATTGATATTTCTTTTGACCCCAATTCGCTTGGAGCGAAGGCATTTGTGCCCCCCCCACCGCCACCACCACCCTTGAGTTCGGTTTCTGTTCCTGATTTGAATGTGACTCCGGTTTTAGATTCAGATTTCGGTTATGGGGAGAGGAGTAAAAGGGTTCCGGATGGTGATTATTCTGGTTTGCAACCGGTTAGGGTGTCTTCAGTTATTGTGGATTTGAATAGGTCGCCTTTCAAGGGGAATGATAGCTCTATTTCAGGGAAGAAGGAGGTGAGTGTGCAGAAGACTGTTGATGGTAGTTCTTCCCGGCCTTCTGCCAGGGAGGCTGATGATTCTCGCGGGAAAAATAAGGTGCTGAATTCAGTTAAAGCTGGCAATGTTTCTTCTGGTAAATCGGCCCCCAGGGTTGTTAAGAAGAAGAAAATTGTTAAGAGAATTGTGAAGAAAGGAACTGCAAATTCTAAGTCAGCTGTGTTGAAATCGGTACCAGCTAATAGGCTTCCTCAAACTGTTGAAGCAGAGAGTGTAGCAGTCAGTTCTGCAACTGCCCCTGTTCCGGAGAAAATTGAAGCTAATTTGGATGAGAAAAACAACATTGTTGACAAGGTTGTTGAGCCAGATTGTTTGCACAATTTACCAAAGGAAGATAATTCATTGAAAGAGGATAAAGAGGGAGGTTTATTGCAACTGAGTTTGGGGCCAGATTCCAGGTCGCAAGAGTGTAAATGTGACAAAAATTCTGATATTGGGAAAGTATCCAGGTTTGAAAGAGATGGAAACATTTCAAATTTTCCATCTTGTGCTTCTAGTAATCAGGATAAGAAGAGTGATTCTGATTGTTTAGATGCAAATAATTCTGTCCATGATAATGCAAATACTTCTGATTGTTTAGATACAAATTGTTCTTTGCCAAATACTGACAAGGTTACTAAATCTTTAAATGGAAGTACTATTCCTGAAGTCAATCACATGGATTATGATAATGAGCATTTATGTCTGAATGAAGTGTCTCTATCACCTGGGAAATATTCAATTGTAGGATCCCCACCGAATTGGAATCTTGTAGATGTAGGTGACGAACTATTCAAAAGCAGTGATACCTTTTCAAGTTCAGAAAAAACTAGGATTCAGGATGGTCTAGATTGCCTGCAACATGCTAGTGCACTGAAGCACACTTCAGATAACGGATCATCTAATTTAGAAGATTGTATTAGTGTTCACTGTTCTGGTATCATGCATGATGCTGGAAAGCAGGTGTCCCCTAGTGATGTCATCATATCCCCTGAGAATTGTGAGACACAAAAGACATTTCCAAATTCTAATATTTCAGTTGGATCTGGTGAAGGGGACACAAGTGAGATAAAAAAGAGAAAAGCTAGAACTCAATTAAATTTTTTGGGTACAGATATAGAATGCTTATCTCTAGACCATGTAAATCTACTTAGCCTGCCAAATAATGTGGATGGAGACTCGAGTCTGTTGTTGAAAGATCCATGTCCTTCAAAAGTCTTAAATCAATCTGTTAAAAACATAGATTTTAACTCACAATCCAGCCTGGATGGGGTCACTGCTTTACATAGGAAAGGGGGGGTTTTAGAGGCTAAGGTTTATGTTGGAAATAATGACAATGATGATGCAAATGAGGTTTCACCAGCTTCTAAAAGGAAAAAAGTCACAGCTAGTCACCCAAATTTCACTCAAAGTCAATCAGAATACCATGATGTGATTGTGACTCCCACATCTGGTGCTGAAGCTCCTAGCGGTTTCAGTGGTAACCAAAAACATCAGCGAGAAGTTGCTTTGTCAAGCATGGCTACATGTATTCCCTCTATTGCTCAATCAATGCCTTATTCAGAGGATATTACTAAATTGTCTGACAATATTATGGCTGGAGGATCTTTTGAGTCTATTGATACAAATAAGGAAACCACAAGTTCTGAGTATTTGGAATTGCAGAACTCAGATATTGTCAATTCTTCACCATGTGAGGACTTGGCATTTCCAAATGTTCAGTTCTCATCATTGGAAGGTGAGTGCAGAGAAAACATTACTCCAATTGTCCCTATATGTAATACTCAAACTGATGTTTTGGTAGTTGGAAATATAATTGGAGAAAAGACTGATTTACCGGCTGTTGAAGAAAATTGCCGGTATAGAGACTTTGTGCAAAAGTCTCCAATGGCTGATATGGAACCTAATGATCTCAATATGAAGAATGATTTGCTTTCTCAGCAGAACGTTATGTCCCATCCATTCAGCAGTGATGAAGTCACAACAAGTAATTCAAATGACGAATTGATTGAGGATGCACCTGGTGCATTGTCAGATATGTTTTCACAAGGGATGGCACCTTCAGTACCGGGTAGAAGTATTATAGAATATACTGCAATCCATGATGAAAATATTTGTGGTGATGAAGAAAATCCAGATAACATATCTATGGTTGAACATGGTTCTGACTTAAATACTTTTACTTCATCAATACAGCAGACAAAAAAGATCAAGACAGATCATGCAATTGGACGGAGTAACCTGATTACAAAGAAGACAAGGTCAGAACCATTACAAGTTTCTTCCAAAGTTACAACTCAGGCCCTTAATTCACATCGTTCTGAGTTGAGTGGGACCAAAAATCAGTCAGGTGGTGTCATTCTCAAAACTTTTCCAGGTCATTCTTTCACCTTTTTGAAGTCAAAGACCAAGACATCTACCTCTTCAACTCATGTGTCAAAGCCCAGAACTTGGCATCGTACAGATAATAATCCTCCTGCTTCTCTACCTAGAATCAAGCCTTCAGTAGGAACAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGTGAACTTTCAAAATACCTCTTATGTTCGTAAAGGTAACAGTCTCGTAAGGAAAGCTACACCAGTTTCTGCTCTACCACAAGTCTTCTCTGTGAAGCAGTCATCTTCTTTGGGCTTAGATGAAATACCAAAAAACATTAAATCTGAAAGCAGGGCTGATGAAATAACAAAAAGCATCATGTCTGAAAGCAGGGCTGGTGTGACAGATCAACCAATGCACTTGAGTACAGGAGCTACAAATGCTCCTCAGCAGAAGCAGAGAACACCTCCATTTCCAATTGACACCAAATCAGAGGAAAATACATCATCCTCATTCGTACAACCACAATCTGGGGGTTTCTGTGAAAGTACATCAGATCCTAGGAAATTTATAGAAACCAATAATAATGCACCAAACTATTCTGAAGATGCACTGAAGCATAATGAAACTCCAGAAAATCAAACTAGTCCATCTGATAATGGGGAGAGCCAAATTGAAGCAAACAATGGAAATACTTTTTCTTTGAATACAAAGAAAATGGTATATATAAGGCCCAAAACAAATCAATTGGTTGCAACTTCAAATTCTTGTGATGTTTCTGTCTCTACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAATTGGTTAGGACTACATTTGATAGCCATGTCAACCAGACAGTTGCAATGCCCAAAAGCACCACAAATTCTGAACGACAAGGAACTAGTAATGCTCTTTGCATCAGGAGGTTTAGTAAGAAGCGGTCACATAAGGTTTCTAGGAGTTCTTGCAAACGTTCAAGAGCCTCATTAGTGTGGACGCTCTGTAGCAAAAATTCTTCTAAAAATGATAGGGACTCACGGCAACAATATCAGAAGGTTTGGCCTCAATTGTTTCCATGGAAAAGAACAACTTTTTTAAGAAACTTCATTCATAATTCTGCTTCAAACTTCAATAGTAGTTCTGTATCTTCAATCAGGTACTTGAGtatttcttattgcttcatttatttttgctttttaactgatttTTGTTGTGTACCTCAACAATATTCAATTACAAATTTGCAATAG	4860	0.3722	MDQHHFLHHHHHYHHPQDHRTTRYNLPPPPPAPPPPLPYHHHHRTPPQPQTQPQQQQQQQQQPQQFPFTTPSTATAAATYPHHHHRHLDDDPPSLPYDLLPPRRTALPWNPNPRTSLPDDFDRQFHRHRPPPPQIDPLRYDPDRDRADPYDRNSAEQSFAWGGAGNYHGDGDPDPGYVRVYSVECDADVAGRGSKRWLMSDRERGRELHESSSSLVNSTNNEKYYHHASDLGRFSRGNNGRECAHEFARTPPKKQVQKKSALLRIQTVKPSNHRNREVDQLRYQGYGSEFFRGKEQYLGHGVKGEERDEREGSPVEIDISFDPNSLGAKAFVPPPPPPPPLSSVSVPDLNVTPVLDSDFGYGERSKRVPDGDYSGLQPVRVSSVIVDLNRSPFKGNDSSISGKKEVSVQKTVDGSSSRPSAREADDSRGKNKVLNSVKAGNVSSGKSAPRVVKKKKIVKRIVKKGTANSKSAVLKSVPANRLPQTVEAESVAVSSATAPVPEKIEANLDEKNNIVDKVVEPDCLHNLPKEDNSLKEDKEGGLLQLSLGPDSRSQECKCDKNSDIGKVSRFERDGNISNFPSCASSNQDKKSDSDCLDANNSVHDNANTSDCLDTNCSLPNTDKVTKSLNGSTIPEVNHMDYDNEHLCLNEVSLSPGKYSIVGSPPNWNLVDVGDELFKSSDTFSSSEKTRIQDGLDCLQHASALKHTSDNGSSNLEDCISVHCSGIMHDAGKQVSPSDVIISPENCETQKTFPNSNISVGSGEGDTSEIKKRKARTQLNFLGTDIECLSLDHVNLLSLPNNVDGDSSLLLKDPCPSKVLNQSVKNIDFNSQSSLDGVTALHRKGGVLEAKVYVGNNDNDDANEVSPASKRKKVTASHPNFTQSQSEYHDVIVTPTSGAEAPSGFSGNQKHQREVALSSMATCIPSIAQSMPYSEDITKLSDNIMAGGSFESIDTNKETTSSEYLELQNSDIVNSSPCEDLAFPNVQFSSLEGECRENITPIVPICNTQTDVLVVGNIIGEKTDLPAVEENCRYRDFVQKSPMADMEPNDLNMKNDLLSQQNVMSHPFSSDEVTTSNSNDELIEDAPGALSDMFSQGMAPSVPGRSIIEYTAIHDENICGDEENPDNISMVEHGSDLNTFTSSIQQTKKIKTDHAIGRSNLITKKTRSEPLQVSSKVTTQALNSHRSELSGTKNQSGGVILKTFPGHSFTFLKSKTKTSTSSTHVSKPRTWHRTDNNPPASLPRIKPSVGTVPPKRPILERKVNFQNTSYVRKGNSLVRKATPVSALPQVFSVKQSSSLGLDEIPKNIKSESRADEITKSIMSESRAGVTDQPMHLSTGATNAPQQKQRTPPFPIDTKSEENTSSSFVQPQSGGFCESTSDPRKFIETNNNAPNYSEDALKHNETPENQTSPSDNGESQIEANNGNTFSLNTKKMVYIRPKTNQLVATSNSCDVSVSTDDNGQTAFSDGYYKRRKNQLVRTTFDSHVNQTVAMPKSTTNSERQGTSNALCIRRFSKKRSHKVSRSSCKRSRASLVWTLCSKNSSKNDRDSRQQYQKVWPQLFPWKRTTFLRNFIHNSASNFNSSSVSSIRYLSISYCFIYFCFLTDFCCVPQQYSITNLQ	1619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	192	210	-	-
	Cca05g00911	1619	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3	305	1588	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	300	451	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	23	43	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	45	77	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1219	1236	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	119	152	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1	18	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1	173	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	392	418	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1323	1397	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1219	1254	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	192	221	-	-
	Cca05g00911	1619	PANTHER	CCCH ZINGC FINGER	305	1588	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	329	344	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1404	1426	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	1323	1426	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	300	316	-	-
	Cca05g00911	1619	MobiDBLite	consensus disorder prediction	857	878	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00911	Cca-Chr5	24508245	24515547	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00911	-		-	gmx:100788859	1902.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g00911	05	24508245	24515547	Cca05g00911	05	24508245	24515547	ECH