Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00907 ATGGAGATTCTCAAAACCTCTTCCTTCGTTAGACTCACCGCGCTCGCGctcttctccctcaccctcttcctcctcctcttcacgcgcttctcccccgcgcctccttcctccctcctcttcttctcctcctccgccGCAGCACCCTCGCCGGAGCAACCTCCGCCTCCGCCGGGGAAGAAGGCGTTCCCCGTGCCTCCGCTGCCGGCGGTGGAGCGGATGGGCGTGCTGGACGGCAACGGCGTCATGACGGAGGATTTCCGGGTGGGGGAGGTGGGTCCTGCGTTCGACCAGGCTTTGCTAAACGGTGGCGTTTCgagggggggtgagggtggtggtggtgtgagagagaaggtgGAGAAGTTGAAGGTGTGTGATGCGAGGATGGTGGATTATGTGCCGTGTTTGGATAATTCTGAAGCGGTGGAGAAGTTGATGGGGGGCGTCAGAGGGGAGAAGTACGAGCGCCATTGTCCGGAGGAAGGGATGGGCCTCCATTGTTTGGTGCCGCCGCCCTCGGGCTACCGGAGGCCCATTCCTTGGCCCAGAAGCAGAGACGAGATTTGGTTCAGTAATGTACCCCATACACGTTTGGTTGAAGATAAAGGTGGCCAAAATTGGATATCAATAAAGAAGGATAAATTTGTTTTTCCTGGTGGTGGAACTCAATTTATACATGGTGCCGATAAATACTTGGATCAGATTTCTGAGGTTGGTCTGGTATTCAAATTCGTTCTGATATATGTTGCTAACATACTGAGAGCAGTTTTGAAATTGAATGTGCAGATGGTTCCTGACATTGAATTTGGTAGCAATATCAGAGTTGCTTTAGACATTGGCTGTGGAGTGGCAAGTTTTGGCGCCTTTTTGATGCAGCGTAACGTGACCACTCTTTCGATAGCACCAAAAGATGTTCATGAAAATCAGATTCAGTTTGCTCTTGAGCGTGGTGTGCCTGCCATGGTAGCAGTATTTGCTACACACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGATGGAATTTTGCTTCTTGAGGCCAACAGGCTCCTGAGGGCAGGTGGCTACTTTGTCTGGGCAGCACAGCCGGTTTACAAACACGAAGAGAGTCTTCAAGAACAATGGAAAGAAATGGAGAACCTGACAGCTCGCATTTGTTGGGAACTTGTACGAAAGGAGGGTTATATTGCTATATGGCGGAAACCTATGAACAATAGCTGCTACCTTAGTCGTGAGACTGCTGTGCATCCTCCATTATGTGAGTCCAATGATGATCCAGATAATGTTTGGTATGTTGGTCTTAAGGCATGCATTAGTCAATTACCAAGTAATGGATATGGAGCAAATGTTACAAAGTGGCCTTTGCGCCTTCATCAACCACCAAAAAGGCTCTATAGCATCCAATTGGATGCCATCATATCCAGAGATGAACTCATTAAAGCTGAATCAAAATATTGGTATGAAATAATAGAAAGTTATGTTCGGGCTTTTCGGTGGCAGGAGTACAACCTAAGAAATGTAATGGACATGAGAGCAGGATTTGGAGGGGTTGCTGCTGCACTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTTAATGGATTTAATACCTTGCCTGTTATATATGACCGAGGGCTGATAGGAGTTATGCATGATTGGTGTGAACCATTTGATACATACCCTAGAACATATGATCTGCTGCATGCAGCAGGTCTCTTCACCGTTGAAAAAAAGAGGCAAAAGTGTAACATCTCAACCATTATGCTTGAGATGGATCGGATGCTAAGACCAGGTGGGCGTGTATATATACGCGACACCACACTTGTTATTGGTGAACTTGAAGAAACTGCAACTGCAATGGGATGGTCAAGTTCCATAAATGATGTAGGAGAGGGTCCCTACTCAAGCTGGAAGATACTAAGGTCTGAGAAACCGTTCTGA 1989 0.4379 MEILKTSSFVRLTALALFSLTLFLLLFTRFSPAPPSSLLFFSSSAAAPSPEQPPPPPGKKAFPVPPLPAVERMGVLDGNGVMTEDFRVGEVGPAFDQALLNGGVSRGGEGGGGVREKVEKLKVCDARMVDYVPCLDNSEAVEKLMGGVRGEKYERHCPEEGMGLHCLVPPPSGYRRPIPWPRSRDEIWFSNVPHTRLVEDKGGQNWISIKKDKFVFPGGGTQFIHGADKYLDQISEVGLVFKFVLIYVANILRAVLKLNVQMVPDIEFGSNIRVALDIGCGVASFGAFLMQRNVTTLSIAPKDVHENQIQFALERGVPAMVAVFATHRLLFPSQAFDLIHCSRCRINWTRDDGILLLEANRLLRAGGYFVWAAQPVYKHEESLQEQWKEMENLTARICWELVRKEGYIAIWRKPMNNSCYLSRETAVHPPLCESNDDPDNVWYVGLKACISQLPSNGYGANVTKWPLRLHQPPKRLYSIQLDAIISRDELIKAESKYWYEIIESYVRAFRWQEYNLRNVMDMRAGFGGVAAALHDLQIDCWVMNVVPVNGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFTVEKKRQKCNISTIMLEMDRMLRPGGRVYIRDTTLVIGELEETATAMGWSSSINDVGEGPYSSWKILRSEKPF 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00907 662 Gene3D Vaccinia Virus protein VP39 263 415 IPR029063 -
Cca05g00907 662 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 495 622 IPR029063 -
Cca05g00907 662 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 130 660 IPR004159 GO:0008168
Cca05g00907 662 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 402 IPR029063 -
Cca05g00907 662 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 53 660 IPR004159 GO:0008168
Cca05g00907 662 CDD AdoMet_MTases 276 370 - -
Cca05g00907 662 PANTHER METHYLTRANSFERASE PMT12-RELATED 53 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00907 Cca-Chr5 24434697 24440074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00907 - - gmx:100809916 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00907 05 24434697 24440074 Cca05g00907 05 24434697 24440074 ECH