Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00879 ATGTCGAGGAGACCGGGAATTCCTACTAGAAGGTTCGGTGACAGTAGCGGTGGATTGTTCTCTTCTTCCAAATCTAGGTCCTCGCCTTTGACAATTGGCCTCGTAGTTGTGGGAGGTTTGTTTCTCGTTGGCTATTTGTATAGGGGCTCAGGTGGATTTAGCAGCCGTTTAGAGTCTGTTAGCAGGGTTGAAGGTGATTATTTGTGCAGTGGAGAGGTCCAACAAGCTATTCCGATTTTACAGAAAGCATATGGAGATAGCATGCATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTGCAAAAGGAGGAGGAAACTGAAGCCTGGGGAATAGAGCCATATGATATAGAGGATGCTGATAATAATTGCAAAGCACTTATCCGTAAAGGCAGTGTGCGTGTGGCTGATATCAAGTTCCCTCTTCCATACAGGCCAAAATCTTTCTCTCTTGTAATTGTTTCAGACGCTCTGGATTACCTTTCTCCCAGATACCTCAACAAAACTCTTCCGGATTTGGTGAGGGTATCAGCTGATGGTGTAGTGATATTTACTGGTTTTCCAAGCACCCAAAAAGCCAAGGTAGCGGATGCCAAGATGAGGAGTTCATCATGGTGGGTCCGGTTTTTCCTCCAGATTAACTTGGAGGAGAATGAAGCTGCTTCTAAGAAGTTTGAACAGGCTTCAACCAAGAGTTCATATGTTCCAAGATGCCAGGTATTCCACCTCAACGCTTTCTTCTATAAAGCCCCTGGCTGTAAAAGACAAATCAAATTTAGTATTTGA 798 0.4386 MSRRPGIPTRRFGDSSGGLFSSSKSRSSPLTIGLVVVGGLFLVGYLYRGSGGFSSRLESVSRVEGDYLCSGEVQQAIPILQKAYGDSMHKVLHVGPDTCYVVSKLQKEEETEAWGIEPYDIEDADNNCKALIRKGSVRVADIKFPLPYRPKSFSLVIVSDALDYLSPRYLNKTLPDLVRVSADGVVIFTGFPSTQKAKVADAKMRSSSWWVRFFLQINLEENEAASKKFEQASTKSSYVPRCQVFHLNAFFYKAPGCKRQIKFSI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00879 265 PANTHER PROTEIN, PUTATIVE-RELATED 1 249 - -
Cca05g00879 265 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 249 IPR044689 GO:0008168|GO:0045488
Cca05g00879 265 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00879 265 CDD AdoMet_MTases 90 191 - -
Cca05g00879 265 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 194 IPR029063 -
Cca05g00879 265 Gene3D Vaccinia Virus protein VP39 72 248 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00879 Cca-Chr5 23836518 23848046 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00879 K23871 - gmx:100805476 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00879 05 23836518 23848046 Cca05g00879 05 23836518 23848046 ECH
Cca05g00879 05 23836518 23848046 Cca03g01765 03 36802227 36805560 PCT