Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00864 ATGGcttcttcttcttcttcttctccttctCCCACTCACTCTTACCTCACACACCTTCCTCTTCATTCATCCTCTCAACAAGGTGAGAAGCGCGTGGACGACGATGAATCGCGGGTTCCGGTTCACGTCGTGACCGCGGCGTCGCAACTTCCCGTGGAGTTTCTGGAACCCTCGCCGCAGAAGGAGCTAGTCATTGGCTTTGACTGCGAGGGCGTTGACTTGTGTCGCAACGGCACTCTCTGTGTAATGCAGCTTGCATTTGCTGATGCTATATACTTGGTTGATGCGATTGATGGGGGGAAGGAGCTCATCCAAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACGAAAGTGATTCATGATTGCAAACGGGATAGTGAGGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTGGTGGATACACAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCCAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGATATTGTGGTACTATGTGTCGTGGCATATCATATGTTGAGAAGGAAGAAGTTCGTGTCCTCCTCCGACAGGACCCCAAGTTTTGGACATACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGCTTTCTTCTCTACATTTATCACCAAATGATGGAGAAATTGAATGAGCGGTCTTTATGGTATCTTACAGTTCGTGGTGCCTTGTATTGCCGTTGTTTCTGTGTGAACAGTAACAATTATGCTGACTGGCCATCTCTAACCCCGATTCCAGATTCGCTGAAAGCTGATGAAAATGGTCCCGAGGAAGAAGTTCTTTCAGTTCTTCATATTCCCCCTGGAAAGATGGGACGTGTAATTGGGAAAAAAGGGGTGACAATTAAGGGAATCAAGGAGGCTTGCGAAGCGGAAATTCTCATGGGAGGTGACAAAGGCCCACCTGACAAGGTCTTCATCATGGGACCAGTGAAGCAGGTGAGGAAAGCCGAGGCCATGTTAAGGGGTCGAATCTTGGATGTGTAG 1059 0.4646 MASSSSSSPSPTHSYLTHLPLHSSSQQGEKRVDDDESRVPVHVVTAASQLPVEFLEPSPQKELVIGFDCEGVDLCRNGTLCVMQLAFADAIYLVDAIDGGKELIQACKPALESNYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLPDDYISFVGLLADPRYCGTMCRGISYVEKEEVRVLLRQDPKFWTYRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLTVRGALYCRCFCVNSNNYADWPSLTPIPDSLKADENGPEEEVLSVLHIPPGKMGRVIGKKGVTIKGIKEACEAEILMGGDKGPPDKVFIMGPVKQVRKAEAMLRGRILDV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00864 352 CDD KH-I 288 345 - -
Cca05g00864 352 ProSiteProfiles Type-1 KH domain profile. 283 345 - -
Cca05g00864 352 PANTHER EGALITARIAN, ISOFORM B 16 350 - -
Cca05g00864 352 Gene3D K Homology domain, type 1 278 350 IPR036612 GO:0003723
Cca05g00864 352 Gene3D - 2 251 IPR036397 GO:0003676
Cca05g00864 352 MobiDBLite consensus disorder prediction 1 38 - -
Cca05g00864 352 Pfam KH domain 288 346 IPR004088 GO:0003723
Cca05g00864 352 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 278 350 IPR036612 GO:0003723
Cca05g00864 352 CDD Egl_like_exo 54 254 - -
Cca05g00864 352 SMART 35exoneu6 41 235 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca05g00864 352 PANTHER - 16 350 - -
Cca05g00864 352 SMART kh_6 282 350 IPR004087 GO:0003676
Cca05g00864 352 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00864 352 Pfam 3'-5' exonuclease 61 234 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca05g00864 352 SUPERFAMILY Ribonuclease H-like 33 259 IPR012337 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00864 K18740 - gmx:100788577 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00864 05 23473047 23478526 Cca05g00864 05 23473047 23478526 ECH