Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00851 ATGGCTCTCGTGACTCGAAGCCGGACCACGTGGCGCCTCCCTCACCGGATAGTTTCGGCGTCGCTCCACAGCGCTTCCTCCGGCCACGGCACCGCTCCCACTTCCTACTGTGcgccgccgccgccgccggcgTATTCATCCCCCGCGGGCATCTCGAAGCCGGCGGAGTTCGTGATCTCGAAGGTGGACGCCCTCATGAACTGGGCCCGCAGGGGGTCCATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCCGTGGAGATGATGCACACGGGCGCTGCCCGCTACGATCTGGACCGCTTTGGAATCATCTTCAGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTTGCTGGCACTCTCACCAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGATCAAATGCCTGAACCAAGGTGGGTGATCTCAATGGGAAGTTGTGCCAATGGAGGTGGATACTATCACTATTCTTATGCTGTTGTTAGAGGATGTGACAGGATTGTTCCTGTTGACATATATATTCCAGGGTGTCCTCCAACTGCTGAGGCTTTACTCTATGGCCTCCTCCAGCTGCAGAAGAAGATCAATAGGCGCAAAGACTTCCTCATGTGGTGGACCAAGTGA 627 0.5486 MALVTRSRTTWRLPHRIVSASLHSASSGHGTAPTSYCAPPPPPAYSSPAGISKPAEFVISKVDALMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLMWWTK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00851 208 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 11 208 - -
Cca05g00851 208 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 57 198 IPR006138 GO:0008137|GO:0048038|GO:0051539
Cca05g00851 208 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 83 192 IPR006137 GO:0051536
Cca05g00851 208 PANTHER NADH DEHYDROGENASE 11 208 - -
Cca05g00851 208 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 164 180 IPR006138 GO:0008137|GO:0048038|GO:0051539
Cca05g00851 208 SUPERFAMILY HydA/Nqo6-like 56 201 - -
Cca05g00851 208 Gene3D - 54 208 - -
Cca05g00851 208 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 49 197 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00851 Cca-Chr5 23189939 23191366 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00851 K03940 - gmx:100814025 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00851 05 23189939 23191366 Cca05g00851 05 23189939 23191366 ECH
Cca05g00851 05 23189939 23191366 Cca03g01745 03 36556450 36558245 PCT