Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00848 ATGGCTGATTCAACCTCAAGCGATTCACTCTCGCTCGACATCGATTCCTTCTCTCCCTCACCTCAGGAACACATTATTAGAACACGTCATGGTTCTGTATCTGTTGCTGTTTATGGAGATCAGGATAAGCCAGCTCTTATAACATATCCTGATTTGGCTTTAAATTATGTCTCGTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGCCCACCTGGGCATGAGTTAGGAGCTGCTGCAATTGATCCAGATTATCCAATTCTCTCTGTAGATGACTTGGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGTCTTAGTGCAGTTATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTCACCTTATTTGCTATGAAGTATAGACAACGAGTTCTTGGTTTGATACTTGTTTCTCCTCTATGTAAAGAACCATCTTGGTCTGAATGGCTGTACAACAAGGTTATGTCAAATTTACTATACTTTTATGGCATGTGTGGGGTGGTAAAGGAAATATTGCTGAAGCGATACTTTAGCAAGGAAATTCGAGGTGGTACTCAGTTGCCAGAGTCAGATATTGTTAAAGCATGCCGAAGGTTGTTGGATGAGAGACAGAGTTTGAATGTGTGGCGTTTCCTGGAAGCTATTAACGGGAGACCTGACATAAGTGAAGGGTTGAGGAAATTACATTGCCGTTCACTTATTTTTGTTGGCGATATGTCACCATTTCACTCGGAGGCTCTTCACATGACTGCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTAATACCAATGGAATACTTTCTTATGGGATATGGCTTGTACAAGCCATCCAAGCTGAGTGTCAGCCCACGAAGCCCCTTGAGCCCATCTTGCATTTCTCCTGAGCTTTATTCACCAGAGAAACAAGGAGAACCAGTTGGTCCCACAGAGAAAAAAGGGAACATAAAGAAAATTGAACAAAGTACAAACAATGAGAAAAGAAAATGTATATACTTTTATGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCTCGAGGAACATCTGGATTCTCTGGTGCTGACCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATCTAGAGCATGCAAAAGACAAGATCATCATGGGAAGTGAACGCAAGTCAGCTGTCATATCCGAGGATTCACGAAAGTTGACTGCTTTCCATGAGGGTGGTCATGCTCTTGTGGCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACTATAGTACCCCGAGGGATGGCTCTCGGCATGGTTACTCAATTGCCCGAGGAGGATGAGACCAGCATCTCCCGGAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCCGGGTTGCTGAAGAGCTGATTTTTGGAGAAAATGAAGTCACTTCTGGTGCATCCTCAGATCTCATGCAAGCAACTAGGTTGGCAAGGGAGATGGTTACCAAATATGGTATGGGCAATGAAGTTGGACTAGTCACACATAATTACAATGATGATGGGAGGAGCATGAGCTCGGAGACTAGGCTTATTATTGAGAAAGAGGTGAAGGAATTCCTGGAGAGGGCTTACAACAATGCAAAAACTATTCTAACCACTCACAACGAGGAGCTTCATGCACTTGCCAATGCTCTTCTGGAGCATGAGACCCTCACAGGAACTCAGATAAAGGCATTGCTTGCACAAggagttggTGATAAAGTACAAAGTTCAAAGTGGTGGGTTGATCTGTGGACCATTGATTCTGCTCCATACACATCATTTGATTGGTTCTCTTCTAGGTGTACCAAGGTGGTGGGGGATGGTCGAAATACCTTTTTTTGGAAGGATGGTTGGAGTGGTCAAGGACCTCTTTGTAATCGATATAGTAGATTGTTCTCTATAGCTTCTGACAAGGATGTATCAGTCGCAAACATGGTGCTTTGGAGGGATGGAGGTGGTGTTGGAAGGATTCTAATGATGGGATATATAATGTGA 2130 0.4352 MADSTSSDSLSLDIDSFSPSPQEHIIRTRHGSVSVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEAYYLLLHNFCIYHISPPGHELGAAAIDPDYPILSVDDLADQIAEVLNFFGLSAVMCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCKEPSWSEWLYNKVMSNLLYFYGMCGVVKEILLKRYFSKEIRGGTQLPESDIVKACRRLLDERQSLNVWRFLEAINGRPDISEGLRKLHCRSLIFVGDMSPFHSEALHMTAKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYKPSKLSVSPRSPLSPSCISPELYSPEKQGEPVGPTEKKGNIKKIEQSTNNEKRKCIYFYVLKADDVDLMIIARGTSGFSGADLANLINIAAIKAAMDGAKAVSMADLEHAKDKIIMGSERKSAVISEDSRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPEEDETSISRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLMQATRLAREMVTKYGMGNEVGLVTHNYNDDGRSMSSETRLIIEKEVKEFLERAYNNAKTILTTHNEELHALANALLEHETLTGTQIKALLAQGVGDKVQSSKWWVDLWTIDSAPYTSFDWFSSRCTKVVGDGRNTFFWKDGWSGQGPLCNRYSRLFSIASDKDVSVANMVLWRDGGGVGRILMMGYIM 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00848 709 Pfam AAA+ lid domain 371 414 IPR041569 -
Cca05g00848 709 SUPERFAMILY alpha/beta-Hydrolases 25 300 IPR029058 -
Cca05g00848 709 Coils Coil 568 588 - -
Cca05g00848 709 Gene3D Peptidase M41 423 618 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00848 709 Pfam Ndr family 23 306 IPR004142 -
Cca05g00848 709 PANTHER PROTEIN NDL2 5 340 - -
Cca05g00848 709 Gene3D alpha/beta hydrolase 18 302 IPR029058 -
Cca05g00848 709 SUPERFAMILY FtsH protease domain-like 430 612 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00848 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 443 IPR027417 -
Cca05g00848 709 Pfam Peptidase family M41 430 609 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00848 709 PANTHER N-MYC DOWNSTREAM REGULATED 5 340 IPR004142 -
Cca05g00848 709 Gene3D - 350 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00848 Cca-Chr5 23151818 23160801 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00848 369 611 Miscellaneous Gene Families AT5G53170 60.082 1.60e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00848 - - gmx:100815084 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00848 05 23151818 23160801 Cca05g00848 05 23151818 23160801 ECH