Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00843 ATGTCGTCTTCTTCCGCGAACGACGCCGAGGCTCTCATGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGGTTCCGCTTATCTACTCCGAGTCTTACGACATAGCGTTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCTAAGTGGGGACGCATTTGTCGATTCCTCGTTTCGTTTGGCATTTTAGACAAAAAATGCATCGTTGAGCCTCTCGAAGCTTCCAAGGATGATCTTCTAGTGGTACACTCCGAATCATATTTGAATAGCTTGAAGGAGAGTTCGAAAGTTGCTATGATAGTTGAGGTCCCTCCCGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTCCCATTCAGGAAGCAGGTTGGAGGAACTATATTAGCTGCAAAACTTGCAAAGGAGAGAGGATGGGCCATTAATGTGGGAGGAGGATTTCATCACTGCTCTGCAGAAAAAGGAGGTGGATTCTGTGCTTATGCAGATATTTCTCTGTGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATGGACTTTTCCTATGACAATCGAGTCTATATCTTGGATATGTACAATCCTGGAATATATCCTTTGGATTATGAGGCGAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGGACACTTACAGAAGAGTACCTGCAAAAATTAGATGAAGCACTTGTGGTTGCTGGGCAAAGATTTAACCCTGAGTTGGTAATTTATAATGCTGGAACTGACATCCTAGAAGGTGATCCATTAGGAAGGTTGGAGATCAGTCCTGATGGAATTGCCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAGAAGAACATTCCTATCGTCATGCTAACTTCAGGTTTGCTATTGTGTTCCGCCCTGTCATATGGTGGCTACTATGGCCTTTTTTAA 999 0.4334 MSSSSANDAEALMRNRILSSKLYFDVSPSKVPLIYSESYDIAFLGIEKLHPFDSSKWGRICRFLVSFGILDKKCIVEPLEASKDDLLVVHSESYLNSLKESSKVAMIVEVPPVALIPNCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFSYDNRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTLTEEYLQKLDEALVVAGQRFNPELVIYNAGTDILEGDPLGRLEISPDGIALRDEKVFRFAREKNIPIVMLTSGLLLCSALSYGGYYGLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00843 332 PANTHER HISTONE DEACETYLASE 11 1 316 - -
Cca05g00843 332 Pfam Histone deacetylase domain 50 316 IPR023801 -
Cca05g00843 332 SUPERFAMILY Arginase/deacetylase 28 316 IPR023696 -
Cca05g00843 332 Gene3D Histone deacetylase domain 30 328 IPR037138 -
Cca05g00843 332 PANTHER HISTONE DEACETYLASE 11 1 316 - -
Cca05g00843 332 CDD HDAC_classIV 50 316 IPR044150 GO:0004407|GO:0016575
Cca05g00843 332 PRINTS Histone deacetylase superfamily signature 154 177 IPR000286 -
Cca05g00843 332 PRINTS Histone deacetylase superfamily signature 265 275 IPR000286 -
Cca05g00843 332 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00843 K11418 - gmx:100781276 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00843 05 23074472 23079385 Cca05g00843 05 23074472 23079385 ECH