Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00842 ATGGATTCAGATTCCCATGCTTTGTCAGAGTCTTGGACAATAGGGGAGAGGGTGTGTGCGGCGTTGATGCCATTCATAGCGGTGGTTGAGGTTCTGATGTTGGCTGTGACAGGATGCTTCAGCATTATTCAGAACCATAAACGTGCCTACACTGCTAAGGATTTTGCAAGCCTCGCTCATCAAACCAGATTCACAGTTAATGAAGTGGAAGCATTGCATGTGCTGTTTAAAAGGTTAAGTAGCACCCTAATTGATGATGGCTTGATTCACAAGGTTTTCGATGTTTTCGACCGAAAAAGAAATGGTGTAATCGAGTTTGACGAATTTGTCCTTGCACTCAGTGTTTTCCATCCATGTGCCCCAATAGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACCTGAGGCAAACTGGGTTTATCGAGCCAGAGGAAGTCAAGCAAATGGTTGTAGCCATTTTGATGGAATATGACATGAATCTCCCTGAGGATCTTCTTGAAGCTATTGTTGACAAGACAATTGTTGATGTGGATAAGGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGGATATCACCAGTATGTTTCCGAGTTTTATTTTCAAAACAGAGGCAGAACCTTGAGATCAAAAATTGTTGTTATTTTGGCATGA 663 0.4057 MDSDSHALSESWTIGERVCAALMPFIAVVEVLMLAVTGCFSIIQNHKRAYTAKDFASLAHQTRFTVNEVEALHVLFKRLSSTLIDDGLIHKVFDVFDRKRNGVIEFDEFVLALSVFHPCAPIDEKIDFAFKLYDLRQTGFIEPEEVKQMVVAILMEYDMNLPEDLLEAIVDKTIVDVDKDNDGKISKEDWKAFGYHQYVSEFYFQNRGRTLRSKIVVILA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00842 220 CDD EFh 125 193 IPR002048 GO:0005509
Cca05g00842 220 PRINTS Recoverin family signature 92 113 - -
Cca05g00842 220 PRINTS Recoverin family signature 139 157 - -
Cca05g00842 220 ProSiteProfiles EF-hand calcium-binding domain profile. 165 200 IPR002048 GO:0005509
Cca05g00842 220 PANTHER CALCINEURIN B-LIKE PROTEIN 10 91 195 - -
Cca05g00842 220 PANTHER CALCINEURIN B-LIKE PROTEIN 10 5 91 - -
Cca05g00842 220 SUPERFAMILY EF-hand 56 194 IPR011992 -
Cca05g00842 220 Pfam EF-hand domain pair 76 110 IPR002048 GO:0005509
Cca05g00842 220 ProSitePatterns EF-hand calcium-binding domain. 178 190 IPR018247 -
Cca05g00842 220 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Cca05g00842 220 Pfam EF-hand domain pair 124 189 IPR002048 GO:0005509
Cca05g00842 220 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Cca05g00842 220 PANTHER CALCINEURIN B 91 195 IPR045198 GO:0005509|GO:0019722|GO:0019900
Cca05g00842 220 PANTHER CALCINEURIN B 5 91 IPR045198 GO:0005509|GO:0019722|GO:0019900
Cca05g00842 220 Gene3D - 54 207 - -
Cca05g00842 220 SMART efh_1 125 153 IPR002048 GO:0005509
Cca05g00842 220 SMART efh_1 169 197 IPR002048 GO:0005509
Cca05g00842 220 SMART efh_1 88 116 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00842 Cca-Chr5 23059916 23063356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00842 9 172 EF-hand Containing Proteins AT4G33000 53.261 3.62e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00842 K06268 - gmx:100810494 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00842 05 23059916 23063356 Cca05g00842 05 23059916 23063356 ECH