Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00839 ATGGTAATGGCAACAATACCCATACGCATCTCTTGTGCTTCACCAACATCAAGATCAATTCTTTCCCCCACCTCACGATTCCTCTCACCATCTTTCACTCCATTTGGCGTTCACGCAAGAAGCACTGGGTCGTTCTCGTTGAGTTCCAAGAACAGCGAAACAGAGTGCCCTGTTCCGCAGGAGCAGCAGCCCATAAACGAATACCACTCCCTCTCCACCTCCTTCCCCTTCTCCTGGGCCGCCGGAGACGCCGTCGAGTACGCCTCCCGCCTCTTCGCCACGGGGGCCTCCTTCGCGCTGCTCGTGGGCCTCCCCGTCGCCTGGGCCCAGGCCGAGGAGCCCGTCAAGAGAGTGCTGTGTGCGGCGTCCAGTGGGCTCTTCGTCGTCACGCTCGCTGTCGTTAGGATGTATCTGGGCTGGGCTTACGTCGGTAACCGACTGCTCAGTGCCACCGTTGAATATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAGACTGCTGAAGTTTTGGCCCGCGATAGACTACTTGGATCATTTTCTGTAAAGCCTGTACTGAGCAGATTGAAAATTACTTTGGTGAGTCTGGCAACTTCGTTACTTGTATGTGCTGTTATCCTCGTTAACATTGATGGGGACCAAAATCTGACCTCAAAAGAACCTGGAGTTAGAGTTGTACCTGGAGTTTACAATGATGAATCTGCAAGATTATTTGAACCAGATGCCTTTTGTGGTGAACCTGATCTTCAATAA 756 0.5238 MVMATIPIRISCASPTSRSILSPTSRFLSPSFTPFGVHARSTGSFSLSSKNSETECPVPQEQQPINEYHSLSTSFPFSWAAGDAVEYASRLFATGASFALLVGLPVAWAQAEEPVKRVLCAASSGLFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKITLVSLATSLLVCAVILVNIDGDQNLTSKEPGVRVVPGVYNDESARLFEPDAFCGEPDLQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00839 251 PANTHER OS05G0539900 PROTEIN 42 250 - -
Cca05g00839 251 Pfam Conserved in the green lineage and diatoms 27 56 195 IPR009631 -
Cca05g00839 251 PANTHER - 42 250 IPR009631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00839 Cca-Chr5 23028971 23031728 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00839 - - gmx:100818101 365.54