Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00837 ATGAGGGAAGAAAACCCATCAGAGAACAGGTCCAAAGCTTCAAAATTTGCAGACCAAAACCAAGTCCCAAAGCCTcaaaacatcaaaggaaccaaccccaacaacaacaacaacaacaactcaaaaacGAGGTTGTGGGGTGCCCACATAGTGAAAGGCTTCTCCAATGACAAAAAAAGCAAGCTTCAaacaacaacgctagccaacaaaaaacaaacactaacatcatcaacaacaacctcggatgctaagaacaacaacaacaacCCTTTTGTGCCTTCTCACTCCCGAGTGAAGAGGTCCCTCATAGGTGACTTGTCATGTTCAATCAACCCCGCTCAGGTTCACCCTCACGCGTTCCCAACGCATAGGAGGCAATCTTCCACGGATTTGTTCACCGAGTTGGATcacatgagaaccgagaaccatctcaccatgtattgcaagaaaatggccgcatgtgctcacaacgacaaactactaatccatttcttccaagaaagccttataggacctgcactaggttggtacatgaacctagaacaaggtcgaattcgcacctggaaggatttggctgaagctttcatcaagaaatataagtacaacatggacatggcaccagatcgaacacagttacagaatatggtgaaaaaggataatgaaacttttaaggaatatgcccaacgttggagaggaatagcagcacaagtacaaccccctttgtctgagaaagaaatggttgcaatgttcattgatacactccaatctcccttctatgacaggatgattggaaatgtatcatcgaacttttcagacctagttgtcattggagaaagagttgaagtaggaataaggagtgggaagattgctcaagtttcaactgaaacaattacaaggaaaccagtgacgaacatggataagaaaaagggaggtgaaacaaatgcagttatgcccaactacaaccctgcaatgatacaaaccccattcccaacaacctttaaccctacccctatcgtatcaaactaccgaccccaattcatgtacaacccccaaatagcatcattttcgcatccaccataccaacctcctcaccaacctaaaatagcctacaaccccccaataccacaaaccccaacaatgccaacacatcagacaaacccatcacaaattccacaacacaatatgagtaatagtcaaaaaaggaataatcaagagaggaaccttgtacccatccctatgacctatactgaacttttgcaacatttagttcgtaattctttggtcacctcaaaaccattaaaacctattcaaccgccatatccaaaatcatttgacccaaaggctaaatgtgattatcatgcaggggtcgtagggcattttactgaaaagggttgggcattaaagtataaagtacaagatttgatagatgaaggattattgagttttaaagaagaaaatatgaatgttagcactaatccactcccaggacatgggaattcgtcagtaaattccCTTGAAAACGAACCTTATCAACTAGTGAAGGAGATAAAGGCCGATATAGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGAAGATGTAGTTGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTTCTTGTGGATGAGAGGGCCGTGCTTAAGCATTTTGATTGGCCAGAGAAGAAAGCTGACACATTAAGAGAAGCAGCATTTGGGTATCAAGATTTGAAAAAGTTAGAATTTGAAGTTTCCTCCTACAAGGATGATCCCCGGCTTCCTTGTGATATTGCTCTAAAGAAAATGGTTGCATTATCGGAAAAGGAAATTACTCAAATATTTGAAAAAACACTCTTAAGCCTTAAGTTTAGATGGAGCGTACGGTTTATAACCTTCTTCGCACAAGAGAATCATTAA 1953 0.1546 MREENPSENRSKASKFADQNQVPKPQNIKGTNPNNNNNNNSKTRLWGAHIVKGFSNDKKSKLQTTTLANKKQTLTSSTTTSDAKNNNNNPFVPSHSRVKRSLIGDLSCSINPAQVHPHAFPTHRRQSSTDLFTELDHMRTENHLTMYCKKMAACAHNDKLLIHFFQESLIGPALGWYMNLEQGRIRTWKDLAEAFIKKYKYNMDMAPDRTQLQNMVKKDNETFKEYAQRWRGIAAQVQPPLSEKEMVAMFIDTLQSPFYDRMIGNVSSNFSDLVVIGERVEVGIRSGKIAQVSTETITRKPVTNMDKKKGGETNAVMPNYNPAMIQTPFPTTFNPTPIVSNYRPQFMYNPQIASFSHPPYQPPHQPKIAYNPPIPQTPTMPTHQTNPSQIPQHNMSNSQKRNNQERNLVPIPMTYTELLQHLVRNSLVTSKPLKPIQPPYPKSFDPKAKCDYHAGVVGHFTEKGWALKYKVQDLIDEGLLSFKEENMNVSTNPLPGHGNSSVNSLENEPYQLVKEIKADIETQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYQDLKKLEFEVSSYKDDPRLPCDIALKKMVALSEKEITQIFEKTLLSLKFRWSVRFITFFAQENH 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00837 650 MobiDBLite consensus disorder prediction 12 43 - -
Cca05g00837 650 Pfam Retrotransposon gag protein 164 255 IPR005162 -
Cca05g00837 650 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 503 625 IPR040265 -
Cca05g00837 650 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 140 IPR040265 -
Cca05g00837 650 MobiDBLite consensus disorder prediction 380 402 - -
Cca05g00837 650 PANTHER PROTEIN CHUP1, CHLOROPLASTIC-LIKE 503 625 - -
Cca05g00837 650 MobiDBLite consensus disorder prediction 1 43 - -
Cca05g00837 650 MobiDBLite consensus disorder prediction 381 402 - -
Cca05g00837 650 MobiDBLite consensus disorder prediction 61 94 - -
Cca05g00837 650 PANTHER PROTEIN CHUP1, CHLOROPLASTIC-LIKE 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00837 Cca-Chr5 22959186 22998501 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00837 - - ccaj:109793652 770.77