Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00832 ATGGAGAATGGTGACATCCCTGAGAATGCTAATGAGCATTGCCCAGGTCCTCAGTCTGAATCTGCTGGAAAATCTGATGCATGCGAAGGATGCCCAAATCAGCAAATTTGTGCCACTGCCCCCAAAGGACCTGACCCTGATCTTGTTGCCATTGCAGAAAGAATGGCTACCGTAAAACATAAGATATTGGTCTTATCAGGAAAAGGAGGAGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCTTTAGCAGCAAGGGATTTTCAGGTGGGTCTTCTTGACGTTGATATTTGTGGTCCAAGCATTCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGTTGGTCTCCTGTCTATGTGGAATCCAACCTTGGGGTGATGTCAATTGGGTTCATGCTTCCCCATCCTGATGAAGCTGTTATATGGAGAGGCCCGCGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGATGTCTACTGGGGTGAACTTGATTTTCTGATTGTTGATGCACCACCAGGAACCTCAGATGAACATATTTCCATTGTTCAATGCCTTGATGCTACTGGAGTAGATGGTGCAATCATTGTTACTACTCCTCAACAAGTTTCTCTTATTGATGTGAGAAAAGAAGTGAACTTTTGCAAGAAAGTTGGCGTGAAAGTTCTTGGGGTTGTAGAGAATATGAGTGGCCTGTGCCAGCCCATCACAGATTTCAAGTTTATGAAATTGACTGATAATGGTGAGCAGAAAGATGTAACTCAGTGGGTTTGGGAATACATGAGAGAAAAAGCGCCAGAAATGCTGAATTTGCTTGCTTGCAGTGAAGTATTTGATAGTAGTGGTGGTGGAGCAGTGAAAATGTGCAATGATATGGGGATACCCTTTCTTGGTAAAGTTCCTTTAGATCCGCAGCTTTGTAAGGCAGCTGAAGAAGGCACATCCTGCTTTGCTAATAAGGATTGCGTTGTTAGTGCTCCGGCATTAAAGAAGATTATAGAACAGATGATTGAAATTAATGGGTGGTCAATGTTAGTGAGTAATGGAGCGTAG 1068 0.4354 MENGDIPENANEHCPGPQSESAGKSDACEGCPNQQICATAPKGPDPDLVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDVDICGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDATGVDGAIIVTTPQQVSLIDVRKEVNFCKKVGVKVLGVVENMSGLCQPITDFKFMKLTDNGEQKDVTQWVWEYMREKAPEMLNLLACSEVFDSSGGGAVKMCNDMGIPFLGKVPLDPQLCKAAEEGTSCFANKDCVVSAPALKKIIEQMIEINGWSMLVSNGA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00832 355 ProSitePatterns Mrp family signature. 166 182 IPR000808 GO:0005524
Cca05g00832 355 Hamap Cytosolic Fe-S cluster assembly factor NUBP1 [NUBP1]. 7 346 IPR028601 GO:0016226|GO:0051536|GO:0051539
Cca05g00832 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 321 IPR027417 -
Cca05g00832 355 PANTHER NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED 1 342 IPR019591 GO:0005524|GO:0016226|GO:0051536|GO:0140663
Cca05g00832 355 PANTHER CYTOSOLIC FE-S CLUSTER ASSEMBLY FACTOR NBP35 1 342 - -
Cca05g00832 355 MobiDBLite consensus disorder prediction 1 27 - -
Cca05g00832 355 Hamap Iron-sulfur cluster carrier protein. 53 342 IPR019591 GO:0005524|GO:0016226|GO:0051536|GO:0140663
Cca05g00832 355 Pfam NUBPL iron-transfer P-loop NTPase 279 341 IPR033756 -
Cca05g00832 355 Pfam NUBPL iron-transfer P-loop NTPase 58 247 IPR033756 -
Cca05g00832 355 CDD Mrp_NBP35 60 313 - -
Cca05g00832 355 Gene3D - 54 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00832 Cca-Chr5 22893255 22896238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00832 - - gmx:100820246 700.664