Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00831 ATGGACCCGCCCGCATCCTACATTTCCTCCTCCGACCTCGCCAACCACAACACGCGCCACGACGCTTGGATCTCCATCCACGGCGCCGTCTACGACGTCACCGAATGGCTCCACCGCCACCCCGGGGGCTCCCTCCCCCTCCTCACGCTCGCCGGCCGCGACGCCACTGATGccttcctcgccttccaccctccctccgccgccgccctcctcccgcgcctctccaccggcctccGCCTCCGCGACCACGCCGTCTCCCCCGCCTCCTCCGACTACCGCCGCCTCCTCTCCGAGCTCTCCCGCGCCGGCCTCTTCGACCGCAAGGGCCACACCACGCTCGCCCTCCTCTCCCTCATCGTCCCCCTCCTCGCCCTCGCCGTCGCCGGCGTCCTCCTCTCGGACCGCGCCTCCGTCCACCTCCTCTCCGCCGCCCTCATCGGCTTCGCCTGGATCCAGAGCGGCTGGATCGGCCACGACTCCGGGCACTACAACGTGATGCCCACGCGCCGCCTGAACCGCCTCATCCAGATCCTCTCCGGCAACGTCCTGGCCGGCATCAGCATCGCTTGGTGGAAATGGAACCACAACGCTCACCACATTTCCTGCAACAGCCTGGACTTCGACCCCGACCTTCAACACCTCCCCTTCTTCGTCGTTTCCTCTTCCTTCTTCACCTCCCTCACTTCCCGCTTCTACGACCGCAAACTCAACTTCGATTCCCTCGCTAGGGTTCTTGTCAGCTACCAGCATTTCACCTTCTACCCTGTCATGTGCTTCGCTAGGCTCAACCTCTTCGCCCAATCCTTCTTCCTCCTGCTCTCCAACCGTAAGGTCGACCACAGAGGTGTAGAGCTTCTTGGCCTGCTCCTGTTCTGGATTTGGTACCCTCTCTTAATCTCCTTCTTGCCCAATTGGTGGGAGAGGGCTCTCTTTGTTCTTGTTAGCTTCTCTGTTACCGCAATTCAGCACGTTCAATTCTGCTTGAACCATTTCTCCTCCAAGGTCTACCTTGGCCCCCCCAATGGCTCCGATTGGTTTCAGATACAGACCAATGGCACTCTCGATGTTAGCTGCTCTTCCTGGATGGATTGGTTCCACGGTGGCTTGCAGTTTCAGGTGGAGCACCACCTCTTTCCGCGCCTCCCACGCTGCAATCTCAGGAAGATTGCGCCATTGGTTAAGGATCTCTGCAACAAGCATAACCTTCCTTACAACTGTGTCTCTTTCTGGAAGGCCAATGTGCTCACCATTCAGACTCTGAGGACCGCCGCCTTGCAGGCCCGCGACGCCTCCAAGCCCCTCCCCAAGAATTTGGTTTGGGAGGCTGTTAATACTCATGGATGA 1344 0.5692 MDPPASYISSSDLANHNTRHDAWISIHGAVYDVTEWLHRHPGGSLPLLTLAGRDATDAFLAFHPPSAAALLPRLSTGLRLRDHAVSPASSDYRRLLSELSRAGLFDRKGHTTLALLSLIVPLLALAVAGVLLSDRASVHLLSAALIGFAWIQSGWIGHDSGHYNVMPTRRLNRLIQILSGNVLAGISIAWWKWNHNAHHISCNSLDFDPDLQHLPFFVVSSSFFTSLTSRFYDRKLNFDSLARVLVSYQHFTFYPVMCFARLNLFAQSFFLLLSNRKVDHRGVELLGLLLFWIWYPLLISFLPNWWERALFVLVSFSVTAIQHVQFCLNHFSSKVYLGPPNGSDWFQIQTNGTLDVSCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKIAPLVKDLCNKHNLPYNCVSFWKANVLTIQTLRTAALQARDASKPLPKNLVWEAVNTHG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00831 447 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 71 IPR001199 -
Cca05g00831 447 Pfam Fatty acid desaturase 140 406 IPR005804 GO:0006629
Cca05g00831 447 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 77 IPR036400 -
Cca05g00831 447 SMART Cyt_b5_2 8 80 IPR001199 -
Cca05g00831 447 PANTHER DELTA(8)-FATTY-ACID DESATURASE 2 6 446 - -
Cca05g00831 447 CDD Delta6-FADS-like 140 402 - -
Cca05g00831 447 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 77 IPR001199 -
Cca05g00831 447 PIRSF FA_sphingolip_des 2 435 IPR012171 GO:0016491
Cca05g00831 447 Gene3D - 2 78 IPR036400 -
Cca05g00831 447 PANTHER FATTY ACID DESATURASE 2 6 446 IPR012171 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00831 Cca-Chr5 22862622 22865893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00831 7 447 Lipid Metabolism Gene Families AT2G46210 63.265 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00831 K21737 - gmx:100776476 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00831 05 22862622 22865893 Cca05g00831 05 22862622 22865893 ECH