Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00830 aTGCTTCAAGACTCGGTCTCAGCCACCCCCACATTCTTGGCCACCCTCTACAGCTGGTTCACCCCCACAGTCTTCTTCCTCCTCCTCCAACTAGTCATTGGAACCATCTTCATCATCTCAAACCTTGCCAACTCCCACAAACGCcatcacccacaacaccctcatcatcatcatcatcataatGACCTTCCTAGATCCCCTTCCATCTTGCAAAGACTCAAATCCATCAACTTCTACCCTTCTCCCCACACACCCCTAAACCCTTACAACACCACCCATTTCCCCCAATCCCATCAAAATGAAAACTTTCAACTCCCCAGATCCCCCTCCCTCCTCCAAAGACTCAAGTCCATCAACCTCTACACCTACTTCCCCACCGAACCCCCCACAAACAAACTCCCCCCGCACGTGCCCGACCACAACCCGCACGTGCCCCAACAACATCAACCCCCCCAAACcgacgccgacgacgacgacgacgacgacaaagaagaggacgatgtctacgtggtcgacgacCGCAATTACGATTATGCCCCCGAGCAAGAACAGGGTTCGGGTTCTTCGCTGGACGAGATTTACAGCAAGCTGCAGCAGGGGCAAGAGGGTCATTTCTCCCGGACCCACTCCGACACCAAGCCGGCGTCCGGCGAGGTTCCGGTGAAGCTGCCGCGGAAGATGAAGAAGTCCGCCAGCAGCAAGTCCGCGTTCTCGCACTTCAAGGAGGAGGACATCGTCGAGACTCGCCGTCCGGCCACCGTGAGAGAGACcggcgccgccgtcgacgaccacgaggtcgacgccaaggccgacgacTTCATCAACAGGTTCAAGCAGCAGCTCAAACTCCAGAGGCTCGATTCCATCATGAGGTACAAGGAAATGATAGGGAGAGGATCACCCAAGTAA 909 0.462 MLQDSVSATPTFLATLYSWFTPTVFFLLLQLVIGTIFIISNLANSHKRHHPQHPHHHHHHNDLPRSPSILQRLKSINFYPSPHTPLNPYNTTHFPQSHQNENFQLPRSPSLLQRLKSINLYTYFPTEPPTNKLPPHVPDHNPHVPQQHQPPQTDADDDDDDDKEEDDVYVVDDRNYDYAPEQEQGSGSSLDEIYSKLQQGQEGHFSRTHSDTKPASGEVPVKLPRKMKKSASSKSAFSHFKEEDIVETRRPATVRETGAAVDDHEVDAKADDFINRFKQQLKLQRLDSIMRYKEMIGRGSPK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00830 302 PANTHER COTTON FIBER (DUF761) 1 83 - -
Cca05g00830 302 PANTHER COTTON FIBER (DUF761) 93 301 - -
Cca05g00830 302 MobiDBLite consensus disorder prediction 128 145 - -
Cca05g00830 302 MobiDBLite consensus disorder prediction 81 104 - -
Cca05g00830 302 MobiDBLite consensus disorder prediction 198 235 - -
Cca05g00830 302 PANTHER OS06G0566500 PROTEIN 93 301 - -
Cca05g00830 302 PANTHER OS06G0566500 PROTEIN 1 83 - -
Cca05g00830 302 MobiDBLite consensus disorder prediction 126 165 - -
Cca05g00830 302 Pfam Cotton fibre expressed protein 264 297 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00830 Cca-Chr5 22832088 22833476 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00830 - - gmx:100775337 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00830 05 22832088 22833476 Cca05g00830 05 22832088 22833476 ECH