Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00828 ATGACTTTGAGGCATTTGATAACTCAGGTTGCAAGACGTCAATCCAAATTTGGACAGATCAAAAGTGTGTTTGTTAGGAGCAATTTTTCTGTCAGTAAGTTTGGAGATAGTGCAGGTATGTCCAATTCAATGGGTGAGGAAGAAACTGTAACTGCTGGTCTTTCTGCTTTTAGAAATGGGGGAAAAGCGGCAAAAGGCATTCCTCTTGGAACTGCTAGTAATCCAATTCATATGGTGGCTAGAGAAGGTGGGAATATAAAAGATCGGCTATGGCGGACACTAGGGTCACTAAGGTCCGTTGCAGTGGCCTTTGTCTTGATTTTGGGTCTAGGAGCACTCATTGAAGCCGCTGAAGATGAAGGAATTAGTAATGAAGGAACTAGTAAAGAAGTGCAACCCAGCATGGACTCAAGTACAAAATTTAATGATGTAAAAGGTGTTGACGAGGCAAAAGCAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATGCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCAAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACTGGAAAAACAATGTTGGCAAGAGCTATTGCTGGAGAGGCTGGGGTTCCGTTCTTCCCGTGCAGTGGAAGTGAATTTGATGATAGGTATGTTGGTGTTGGTGCAAGAAGGGTGAGGCATCTTTTTGCTGCTGCAAGGAAGCAATCACCTTCTATAATATTCATTGATGAGATTGATGCTATTGGAGGAAGCCGGAATCCAAAGGACCAAATGTACATGAGGGAGACATTAAATCAGTTACTGGTTGAGCTAGACGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACAAATTTTCCAGAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGATGTTCCCAATCCAGATGTAAAAGGAAGGCAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCTCGAGGAACATCTGGATTCTCTGGTGCTGAGCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATCTAGAGCATGCAAAAGACAAGATCATCATGGGAAGTGAACTCAAATCAGCTGTCATATCCGAGGATTCACGAAAGTTGACTGCTTTCCATGAGGGTGGTCATGCTCTTGTGGCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACTATAGTACCCCGAGGGATGGCTCTCGGCATGGTTACTCAATTGCCCGAAGAGGATGAGACCAGCATTTCCCGGAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCTGGGTTGCTGAAGAGCTGATTTTTGGAGAAAATGAAGTCACTTCTGGTCCATCCTCAGATCTCATGCAAGCAACTAGGTTGGCAAGGGTGATGGTTACCAAATATGGTATGGGCAATGAAGTAGGACTAGTCACACATAATTACAATGATGATGGGAGGAGCATGAGCTCGGAGACTAGGCTTATTATTGAGAAAGAGGTGAAGGAATTCCTGGAGAGGGCTTACAACAATGCAAAAACTATTCTAACCACTCACAACGAGGAGCTTCATGCACTTGCCAATGCTCTTCTGGAGCATGAGACCCTCACAGGAACTCAGATAAAGGCATTGCTTGCACAAGTTAGATTACAGATGCAGCAGCAACATCAGCCACAAACAGTTGAAGCTCAGAGTAGATCCAACAAAGTGCCTTCATCATCAAGCCACCcagcagcatctgctgcagctgccgccgctgccgccacagcagtggctacagcctctgctgctgctgcCAAGGCTAAAAGTGCTCCAGTGGGATCTTAA 1902 0.4327 MTLRHLITQVARRQSKFGQIKSVFVRSNFSVSKFGDSAGMSNSMGEEETVTAGLSAFRNGGKAAKGIPLGTASNPIHMVAREGGNIKDRLWRTLGSLRSVAVAFVLILGLGALIEAAEDEGISNEGTSKEVQPSMDSSTKFNDVKGVDEAKAELEEIVHYLRDAKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFPCSGSEFDDRYVGVGARRVRHLFAAARKQSPSIIFIDEIDAIGGSRNPKDQMYMRETLNQLLVELDGFKQNEGIIVIGATNFPESLDKALVRPGRFDRHVDVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTSGFSGAELANLINIAAIKAAMDGAKAVSMADLEHAKDKIIMGSELKSAVISEDSRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPEEDETSISRKQMLARLDVCMGGWVAEELIFGENEVTSGPSSDLMQATRLARVMVTKYGMGNEVGLVTHNYNDDGRSMSSETRLIIEKEVKEFLERAYNNAKTILTTHNEELHALANALLEHETLTGTQIKALLAQVRLQMQQQHQPQTVEAQSRSNKVPSSSSHPAASAAAAAAAATAVATASAAAAKAKSAPVGS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00828 633 MobiDBLite consensus disorder prediction 121 140 - -
Cca05g00828 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 402 IPR027417 -
Cca05g00828 633 Pfam AAA+ lid domain 330 373 IPR041569 -
Cca05g00828 633 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Cca05g00828 633 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 591 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca05g00828 633 PANTHER METALLOPROTEASE M41 FTSH 43 601 - -
Cca05g00828 633 CDD AAA 152 307 - -
Cca05g00828 633 Pfam ATPase family associated with various cellular activities (AAA) 178 307 IPR003959 GO:0005524|GO:0016887
Cca05g00828 633 Gene3D - 309 382 - -
Cca05g00828 633 Gene3D Peptidase M41 383 581 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00828 633 MobiDBLite consensus disorder prediction 581 609 - -
Cca05g00828 633 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 43 601 - -
Cca05g00828 633 Pfam Peptidase family M41 389 568 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00828 633 MobiDBLite consensus disorder prediction 126 140 - -
Cca05g00828 633 MobiDBLite consensus disorder prediction 581 604 - -
Cca05g00828 633 SUPERFAMILY FtsH protease domain-like 389 576 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca05g00828 633 SMART AAA_5 174 310 IPR003593 -
Cca05g00828 633 Coils Coil 527 547 - -
Cca05g00828 633 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 471 490 - -
Cca05g00828 633 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 182 201 - -
Cca05g00828 633 Gene3D - 122 308 IPR027417 -
Cca05g00828 633 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 122 570 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00828 Cca-Chr5 22789659 22806075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00828 74 570 Miscellaneous Gene Families AT5G53170 55.750 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00828 K08955 - gmx:100808349 842.802