Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00822 ATGCAGATCAATGCATCCCACCACAGAGTACATGAAAAACAACCATACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAACGATCCAAATGGACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAATATAACCCTTATGCGGCAACCTTTGGTAGGCACATGGTATGGGGTCATTCTGTATCCTATGATCTCATCAATTGGATTCATCTAAATCATGCTCTTGAACCAAGTGAATCTTATGACATTAATGGCTGCTATTCTGGCTCAATCACAACCCTCCCTGGGGAAAAACCTATTATTATGTATACAGGAAGTGATACTAGAAAACATCAAATTCAAAACTTGGCTATGCCAAAGAATCTACTAGACCCCTTCTTAAGAGAATGGGTGAAACACCCCCAAAACCCTGTGATGACTCCACCTAGTGGAGTTGAATTGGACGGTTTCAGAGATCCAACAACTGCTTGGCAAGGAAGTGATGGAAAATGGAGAGTAATTATTGGTGCCAAAAATGGTGATGAAGGGAAGGCTCTTCTCTACCATAGTGAGGATTTTGTTAATTGGAAACTACACTACAATCCTTTGTATGCATCAGACAGTACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGTACATTAGTGGCACAAAGAATGGGGTGGATACATCTGTCCAAAACAGCAGTGTTAAGCATGTCTTGAAATTGAGTTATCAAAACAAACAACAAGAGTACTATTTGGTAGGTGAATATTTTCCTGATCAGGAAAAGTTTATTCCTGATCCTGACTTGGGAGGAAGTTGTATGGACTTAATATTGGACCATGGAATGTTTTATGCTGGCAAGACATTTTTTGAATATGGCAAGAACAGAAGGATATTGTGGGGGTGGTCAAAGGAGTGTGACACCACACAGGATGATGTTGAGAAAGGATGGGCTGGTCTACAGGGTATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGTGGTTGATGCAATGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACATGTTAGCATAATGGGAGAGAAACTGGTTGGTGGATCAACTCTTGAAGTCTCAGGTATCACTGCATCACAAGTTGATGTAGAAGTGTTATTTGAGCTACCTGAACTGGAAAGTGCAGAGTGGCTAGATCAAAGTGAAGTTGATCCCCTCTTACTGTGTAGTGAAGAATATGCATCAAGAAGTGGTATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAGCAGAACACACTGCAATATTCTTCAGAATATATAGAGCTCCCAATAGATATGTATGCTTCATGTGCAGTGACCAGAGCAGGTCATCATTGCGGCAGGACCTTGATAAAACCCCATATGGAACCATCTTTGACATAGACCCCAATCTCAAAACGATTTCACTTAGAAGCTTGATTGATCGCTCCATTATTGAGAGTTTTGGAGAGAAAGGGAGAATTTGTATTACTAGTAGAGTTTATCCATCATTGGCTATAGACAAAGATGCACATCTTTATGTATTCAACAATGGAAGCCAGAGTGTGGTGATCTCAGAACTTAATGCTTGGACCATGAAGAAAGCAGAATTTGATCAAGAGTAA 1638 0.4054 MQINASHHRVHEKQPYRTWYHFQPPQNWMNDPNGPMYYKGVYHFFYQYNPYAATFGRHMVWGHSVSYDLINWIHLNHALEPSESYDINGCYSGSITTLPGEKPIIMYTGSDTRKHQIQNLAMPKNLLDPFLREWVKHPQNPVMTPPSGVELDGFRDPTTAWQGSDGKWRVIIGAKNGDEGKALLYHSEDFVNWKLHYNPLYASDSTGMFECPDFFPVYISGTKNGVDTSVQNSSVKHVLKLSYQNKQQEYYLVGEYFPDQEKFIPDPDLGGSCMDLILDHGMFYAGKTFFEYGKNRRILWGWSKECDTTQDDVEKGWAGLQGIPRQVWLDKSGKWLMQWPIEEVEKLRDKHVSIMGEKLVGGSTLEVSGITASQVDVEVLFELPELESAEWLDQSEVDPLLLCSEEYASRSGIIGPFGLLALASEDQAEHTAIFFRIYRAPNRYVCFMCSDQSRSSLRQDLDKTPYGTIFDIDPNLKTISLRSLIDRSIIESFGEKGRICITSRVYPSLAIDKDAHLYVFNNGSQSVVISELNAWTMKKAEFDQE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00822 545 SUPERFAMILY Concanavalin A-like lectins/glucanases 340 539 IPR013320 -
Cca05g00822 545 Pfam Glycosyl hydrolases family 32 C terminal 343 535 IPR013189 -
Cca05g00822 545 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 9 544 - -
Cca05g00822 545 Gene3D - 353 537 - -
Cca05g00822 545 Gene3D Glycosyl hydrolase domain; family 43 26 352 IPR023296 -
Cca05g00822 545 ProSitePatterns Glycosyl hydrolases family 32 active site. 21 34 IPR018053 GO:0004553|GO:0005975
Cca05g00822 545 CDD GH32_Fruct1-like 27 329 - -
Cca05g00822 545 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 9 544 - -
Cca05g00822 545 SMART glyco_32 21 497 IPR001362 GO:0004553|GO:0005975
Cca05g00822 545 SUPERFAMILY Arabinanase/levansucrase/invertase 12 341 IPR023296 -
Cca05g00822 545 Pfam Glycosyl hydrolases family 32 N-terminal domain 21 340 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00822 Cca-Chr5 22685140 22687705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00822 31 543 Glycoside Hydrolase AT1G55120 52.107 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00822 - K01193 gmx:100806753 1015.76