Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00821 ATGGAGATCAATGAAAATGCATCCTCAGACAACATGAACTTTATCAAGTATAAGGTACCTAAGAAACAGCCTTATAGAACTTGGTACCACTTTCAATCCCCACAAAATTGGATGAACGCACCTATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCTCATGCAGCAACCTTTGGTGATAAAATGGTGTGGGCTCACTCGGTGTCCTATGATCTCATCAATTGGATTCATCTAAATCATGCCATTGAACCAAGTGAGCCCTATGACATCAACAGCTGCTGGTCAGGGTCAGCCACTATACTCCCAGGTAAAGAGCAACCTCTTATTTTGTACACAGGAATTGATAATAATAAGCATCAAGTTCAGAACTTAGCCATGCCAAAGAATCCCTCAGACCCCTTCTTAAGGGAATGGGTGAAACACCCACAGAACCCTGTCATGACTCCACCAAGTGGAGTTGAAGTGAATAATTTCAGAGACCCTTCAACTGCTTCGCAGGGAAAAGATGGAAAATGGAGAGTAGTCATTGGTGCTCAAAATGGTGATGAAGGGAAAGTAGTTCTTTATCTAAGTGAGGATTTTGTTAATTGGACTCAGGATCCTAATCCCTTTTATGCAACAGATAATACAGGTGTTTGTGAGTGTCCAGACTTTTTTCCTGTGTACTTCAATGGAAGCACAAATGGTGTGGATACATCTTTGCATGATCCAAGTGTTAGACAAGTCTTTAAGATAAGCTATCTTTGCAGACACGAGGACTATTATTTTCTTGGTAAATATGTTTGTGATGAGGGGAACTTTATCCCTGATGTTAAGTTCACAGGAACTAGTTTGGACTTAAGGTTGGACTATGGTAAATTTTATGCCTCAAAGTCATTTTTTGATCATGCTAAGAATAGGAGGATATTATGGAGGTGGGTGAATGAGTGTGACACTACACAAGATGACATTGAGAAAGGATGGGCTGGTTTACAGTGTATTCCAAGACAAGTTTGGCTTGATGAAAGTGGGAAAAGGTTGATGCACTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAATTAGCATAATGGGAGAGAAACTGGTTGGTGGAACAATTCTTGAAGTCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTATTTGAACTACCAGAACTAGAGAATGCAGAGTGGCTAGATGAAAGTGAAGTTGATCCCCACTTGCTGTGTAGTGAAGAATATGCATCTAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCAGAGGACCAAGCAGAACACACTGCAATCTTCTTCAGAATATATAGAGCTCCCAATAGATATGTATGCTTCATGTGTAGCGACCAGAGCAAGTCTTCATTGCGACAGGACCTTGATAAAACAACATATGGAACCATCTTTGACATAGATCCTAATCTCAAAACGATTTCACTTAGAAGCTTGATTGATCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAGAATTTGTATAACTGCTAGAGTTTATCCATCATTGGCCATAGACAAAGATGCACATCTTTATGTATTCAACAACGGAAGCAAGAGTGTGGTGATTTCAGAACTGAATGCTTGGAGCATGAAGCAAGCAGAATTTGTTCAAGAGGAAAGCATAAATAAACTCTGGCGCCATCAATTTACACCGCTTGTGAAACATAAGAAGGTGTTCCTGCACTTCTACATACTGGGGTGGTATTCGACCGGGAGTGATGCGGAGGAAACAAGATATGCATATTCACAAAGCTGCACCATTTCATAA 1809 0.4052 MEINENASSDNMNFIKYKVPKKQPYRTWYHFQSPQNWMNAPMYYKGVYHFFYQHNPHAATFGDKMVWAHSVSYDLINWIHLNHAIEPSEPYDINSCWSGSATILPGKEQPLILYTGIDNNKHQVQNLAMPKNPSDPFLREWVKHPQNPVMTPPSGVEVNNFRDPSTASQGKDGKWRVVIGAQNGDEGKVVLYLSEDFVNWTQDPNPFYATDNTGVCECPDFFPVYFNGSTNGVDTSLHDPSVRQVFKISYLCRHEDYYFLGKYVCDEGNFIPDVKFTGTSLDLRLDYGKFYASKSFFDHAKNRRILWRWVNECDTTQDDIEKGWAGLQCIPRQVWLDESGKRLMHWPIEEVEKLRDKQISIMGEKLVGGTILEVSGITASQADVEVLFELPELENAEWLDESEVDPHLLCSEEYASRSGIIGPFGLLALASEDQAEHTAIFFRIYRAPNRYVCFMCSDQSKSSLRQDLDKTTYGTIFDIDPNLKTISLRSLIDRSIIESFGEKGRICITARVYPSLAIDKDAHLYVFNNGSKSVVISELNAWSMKQAEFVQEESINKLWRHQFTPLVKHKKVFLHFYILGWYSTGSDAEETRYAYSQSCTIS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00821 602 Pfam Glycosyl hydrolases family 32 N-terminal domain 30 347 IPR013148 -
Cca05g00821 602 SUPERFAMILY Concanavalin A-like lectins/glucanases 347 546 IPR013320 -
Cca05g00821 602 Gene3D Glycosyl hydrolase domain; family 43 35 359 IPR023296 -
Cca05g00821 602 SMART glyco_32 30 504 IPR001362 GO:0004553|GO:0005975
Cca05g00821 602 SUPERFAMILY Arabinanase/levansucrase/invertase 22 348 IPR023296 -
Cca05g00821 602 Gene3D - 360 544 - -
Cca05g00821 602 CDD GH32_Fruct1-like 36 336 - -
Cca05g00821 602 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 19 553 - -
Cca05g00821 602 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 19 553 - -
Cca05g00821 602 Pfam Glycosyl hydrolases family 32 C terminal 350 543 IPR013189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00821 Cca-Chr5 22664485 22669761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00821 39 549 Glycoside Hydrolase AT1G55120 52.207 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00821 - K01193 gmx:100806220 1010.75