Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00813 ATGTGGGAATCTATTCTATTAACGGTGGCTGCCACCGCCGGCAACAACATAGGAAAGATCCTTCAGAAGAAGGGCACTATCATTCTTCCACCTCTCTCTCTCAAACTCAAGGTCATAAGGGCGTATGTTTTAAACAAAACCTGGGTGATAGGTTTTCTAATGGATATATCTGGGGCACTATTGATGTTAAGGGCACTGTCTCTGGCTCCAGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTAGCAATTCTTTCAATATTTTCTCATTTTTATCTCAAGGAAGTGATGAATGCTGTTGATTGGGTTGGCATTACATTGGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGTGGTAGCTCTATCTATTTTTCACATACCAGGACTGGCATTTGTTGTTTTCATCTTGTTTATACTGCTTAATGGATGGCTTCGAATATGCAAGCATCAACGTAGAGAACAAGAGATGATGGAATACGATGTCGTTGAGGAAATCATCTATGGTTTGGAATCTGGTATTTTGTTTGGGATGTCAGCTGTAATATCAAAGATGGGATTTCTATTCCTAGAGCAAGATTTTCCCAAGCTATTGGTTCCTGTGTGCATCATGATCAGTGTGTGTTGTAGTGGCACAGGCTTTTACTACCAGACACGTGGCCTAAAGCATGGGAGAGCTATTGTAGTTTCTACATGTGCAGCTGTGGCATCAATTTTGACTGGTGTTCTTGCTGGGATGCTTGCTTTGGGTGAGCGACTTCCTTCTGAACCAAAAGCTCGCTTGGCACTTCTTCTTGGATGGCTACTCATCATTGTTGGTGTGATTTTACTTGTTGGTTCAACACGGCTAGTGAGATTCCTTTCTTGCTCTTCACGACGGAAAAGAAGCAATGTGGATAAGAATTATGGTCCTAGAAGAACCACTTCTTCCCGGGTGAGGGAACCAAGTCCAAGTGTTGTCATTCAAGCAGCAACATTAAATCCTTTACTATCATCATCTTCCAAAGAAAAAGCTTGA 1032 0.4283 MWESILLTVAATAGNNIGKILQKKGTIILPPLSLKLKVIRAYVLNKTWVIGFLMDISGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGEEQEVVALSIFHIPGLAFVVFILFILLNGWLRICKHQRREQEMMEYDVVEEIIYGLESGILFGMSAVISKMGFLFLEQDFPKLLVPVCIMISVCCSGTGFYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSRRKRSNVDKNYGPRRTTSSRVREPSPSVVIQAATLNPLLSSSSKEKA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00813 343 Pfam Magnesium transporter NIPA 17 283 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cca05g00813 343 PANTHER MAGNESIUM TRANSPORTER NIPA9-RELATED 1 340 - -
Cca05g00813 343 MobiDBLite consensus disorder prediction 307 321 - -
Cca05g00813 343 Gene3D - 4 118 - -
Cca05g00813 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 191 285 - -
Cca05g00813 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 25 119 - -
Cca05g00813 343 PANTHER UNCHARACTERIZED 1 340 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cca05g00813 343 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00813 Cca-Chr5 22498486 22503992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00813 - - gmx:100819228 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00813 05 22498486 22503992 Cca03g01722 03 36343809 36347933 PCT