Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00810 ATGCTGTCTTGTGTAACAGAAAATATGGGCTTACTCTGTAGCAGAAATCGTCGTTACAATGATGCTGATGCAGAAGAAAATGCACAGGCTGCAGAGATTGAAAGAAGAATTGAGTTAGAAACAAAGGCCGAAAAGCATATTCAGAGACTTCTACTTCTTGGAGCTGGAGAGTCAGGGAAGTCCACAATATTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCAGAACTAAAAAGCTACTTACCAGTCATTCATGCTAATGTGTATCAGACAATAAAATTACTGCATGATGGATCAAAGGAGTTTGCCCAGAATGATGTTGATTTCACAAAGTATGCTATATCCAATGAAAATAAGGAAATCGGGGAAAAGTTATCAGAAATTGGAGGCAGGCTGGATTACCCATATCTCACCAAGGAACTTGCACAGGAAATTGAGAATCTGTGGAAGGATCCTGCTATTCAGGAGACATATGTCCGTGGTAGTGAGCTTCAAATTCCAGATTGTACTGATTATTTCATGGAAAATTTGCAAAGGCTATCTGACACAAATTATGTTCCAACAAAGGAGGATGTTTTGTATGCAAGAGTGCGTACCACTGGTGTTGTAGAGATTCAGTTCAGCCCTGTTGGGGAAAATAAGAAAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGCGGACAGAGAAATGAGAGGAGGAAATGGATCCATTTGTTTGAAGGAGTGTCGGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTTTGAGGATGAAAACAGAAACAGAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCGTGTTTTGAGGTTCCACTTAATGTATGTGAGTGGTTCAAAGATTACCAACCGGTTTCAACAGGGAAACAAGAGATTGAGCATGCATATGAGTTTGTAAAGAAAAAATTTGAGGAATCATATTTCCAGAGCACTGCACCGGATCGCGTAGACCGAGTCTTTAAGATCTACCGGACCACTGCTCTTGATCAGAAGGTAGTGAAGAAGACTTTCAAGCTTGTTGATGAGACATTGAGGCGAAGAAATCTCTTAGAGGCTGGCATGTTATGA 1119 0.4039 MLSCVTENMGLLCSRNRRYNDADAEENAQAAEIERRIELETKAEKHIQRLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDFTKYAISNENKEIGEKLSEIGGRLDYPYLTKELAQEIENLWKDPAIQETYVRGSELQIPDCTDYFMENLQRLSDTNYVPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFEVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQSTAPDRVDRVFKIYRTTALDQKVVKKTFKLVDETLRRRNLLEAGML 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00810 372 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 PRINTS Alpha G protein (transducin) signature 245 273 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 PRINTS Alpha G protein (transducin) signature 223 240 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 PRINTS Alpha G protein (transducin) signature 188 210 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 Gene3D - 49 360 IPR027417 -
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 100 114 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 307 322 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 85 98 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 324 336 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 124 138 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PRINTS Plant G protein alpha subunit signature 208 223 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 372 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca05g00810 372 SMART galpha_1 27 371 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 Pfam G-protein alpha subunit 30 360 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 Gene3D - 76 201 IPR011025 GO:0007165
Cca05g00810 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 368 IPR027417 -
Cca05g00810 372 ProSiteProfiles G-alpha domain profile. 46 372 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 CDD G-alpha 48 366 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 372 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca05g00810 372 SUPERFAMILY Transducin (alpha subunit), insertion domain 75 200 IPR011025 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00810 Cca-Chr5 22419116 22433456 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00810 K19729 - gmx:547977 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00810 05 22419116 22433456 Cca05g00810 05 22419116 22433456 ECH