Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00800 ATGAAGCTTTGGTGCTGTCTCTGCTTCACTGACCCAGAAGACCAAGACCGCCACCTTATGAAGGAGGACGACTTTTTCGGAAACGACGCCGTCGTTTCCGCCGTTTCCGACGACCAATTCGCCATGCCCCAGACCTTCCCTCTCCGCTCCGACGCCGAGAGCAGCTccgccgccgcctgtccggacaccgccgccgccgACACCCGCGATTTGAGCCACAAACGCGCCAAGTTCTACGCCGATTTCGAGGAGCATCACTTTTCAAAGCTTAATGCCGGGAAATGCGGTTCTTCTAATGAATATGGTGATTATGACTATATTAAGGGCTCTCTTCGGCCCAACGGCGATACTTGTTATGAAGCTTTTGCATTGATGGGTGCGGGTGAGGAGAGTAGCTTTGATTCTAGCATTGTGAAAGACGGTGAAGGAGGTGATAGTGATCTCTCGAAAGTGGAAGATGTAGAGGTCAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTTTGTAAGGCTGCCAGAGTTTGTAAGCAGTGGCGTGGTGCTAGTGCTCATGAAGATTTCTGGAAGAGTTTGAATTTTGAGGATAGGAACATATCTGTTGAACAATTCGAGGACATGTGTAGGCGTTATCCTAATGCCACATCAATGAGCATATCTGGTTCTGGTATTTACTTGCTTGTCATGAAGGCCATCTCTTCATTAAGGAATCTAGAGGTTCTAACATTGGGAAGAGGACAAATAGCTGATACTTTTTTCCATGCTTTAGCCGATTGTTGTATGTTAAAAAATTTGAATATCAATGATTCTACACTAGGCAATGGCATCCAGGAGATAACAATTAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGCGATGCGAATAGCAGTCAGGTGCCCACAACTTGAAACTATGTCGTTGAAGCGTAGTAACATGGCACAGGTTGTGCTTAATTGTCCTCTTCTGCAAGAGCTTGATATAGGCTCATGCCACAAACTTCCCGACGCTGCAATACGTGCTGCTGCAACTTCATGCCCTCAACTTGTCTCACTGGACATGTCAAATTGTTCATGTGTCAGTGATGAAACTCTACGTGAAATAGCTTTGAGTTGTGCTAACCTTAGTTTTCTTGACGCATCATACTGCCCAAACATATCTTTGGAGTCTGTTAGACTGCCGATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGCATTACTTCTGCGTCAATGGCTGCAATAGCTCACAGTTATATGTTGGAGGTTTTGGAGCTTGACAATTGCAGTCTGTTGACTTCAGTGTCTTTGGATCTTCCCCGTCTGTGTACTATTAGATTGGTACACTGTCGCAAATTTGCTGATTTGAACTTGAGGACTATGATGCTTTCTTCCATACTAGTGTCAAATTGCCCTGCACTCCATCGTATCAACATCACTTCAAATTCACTTCAAAAATTAGCATTGCAAAAGCAAGATAGTTTAACCACATTAGCTCTGCAATGTCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACAAACTCTATATGTGATGTTTTTAGTGATGGTGGAGGATGTCCTATGTTAAAATCACTAGTTCTTGACAATTGTGAGAGCTTGACATCAGTTCGGTTCACCAGCACCTCTTTAGTCAGTCTTTCACTTGGTGGTTGTCGGGCAGTTACTACTCTTGAGCTCACATGCCCTAACCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTGGAAACAGCAAAGTTTTGTCCTGTTGGTCTTCGATCTCTCAATTTAGGAATATGTCCGAAATTGAATATACTCAGCATAGAAGCCATGTTTATGGTCTCACTTGAGTTGAAAGGATGTGGTGTACTGTCTGAAGCATTACTTAATTGTCCTCTCTTGACATCTCTGGATGCTTCCTTTTGCAGCCAACTCACTGATGAATGTTTGTCTGCAACAACAGCCTCATGCCCATTGATTGAGTCATTAATATTGATGTCATGCCCATCAATTGGTTTAGATGGACTTTATTCTTTGCGTTGGCTCCTGAATTTGACCCTGCTGGATTTGTCATACACTTTTTTGGTCGATTTGCAGCCTGTTTTTAAGTCTTGTCTGCAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTCACACATCACTTGAACCTCTTTACAAGGGGGGTGCTTTACCAAAACTTCAGGAGTTGGACTTGTCTTATGGAACACTCTGTCAGTCTGCCATAGAGGAGCTTCTTTCCTGCTGCACACACCTTACACGTGTGAGCTTGAATGGCTGTGCTAATATGCATGATTTAAACTGGGGATGCAGTCATGGGCATATTGCTGAGTTGCCTGATGTAAATGTTATATCCGTTGCAAGTTCTCATGAAAATGTCCACGAGTTAAGTGAGCAACCCACCCGTTTACTGCAGAACCTGAACTGTGTGGGATGTCCAAACATTAGGAAAGTTTTCATTCCATCAACAGCACACTGTTCCCGTATGTTGTTTTTAAACCTTTCTCTATCTGCTAATTTGAAGGAAGTTGATGTAGCTTGTCTCAACCTAAGCTGGCTTAATCTAAGCAATTGTTCCTCTTTGGAAGTTTTAAAGCTAGAGTGTCCAAGATTGACCAGTCTTTTTCTTCAGTCTTGCAACATTGATGAGGAAGCTATTGAGGCTGCTATATCAAAATGCACTATGCTGGAAACTCTTGATGTTCGCCACTGTCCAAAGATAAGCTCAATGAGCATGGTAAGATTACGTGCTGCATGTTCTAGTTTGAAGCGTATATACGGCAGCTTGTCAACTTCATAA 2871 0.4208 MKLWCCLCFTDPEDQDRHLMKEDDFFGNDAVVSAVSDDQFAMPQTFPLRSDAESSSAAACPDTAAADTRDLSHKRAKFYADFEEHHFSKLNAGKCGSSNEYGDYDYIKGSLRPNGDTCYEAFALMGAGEESSFDSSIVKDGEGGDSDLSKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRGASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATSMSISGSGIYLLVMKAISSLRNLEVLTLGRGQIADTFFHALADCCMLKNLNINDSTLGNGIQEITINHDRLCHLQLTKCRAMRIAVRCPQLETMSLKRSNMAQVVLNCPLLQELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCPNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPRLCTIRLVHCRKFADLNLRTMMLSSILVSNCPALHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPMLKSLVLDNCESLTSVRFTSTSLVSLSLGGCRAVTTLELTCPNLEKVILDGCDHLETAKFCPVGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEALLNCPLLTSLDASFCSQLTDECLSATTASCPLIESLILMSCPSIGLDGLYSLRWLLNLTLLDLSYTFLVDLQPVFKSCLQLKVLKLQACKYLTHTSLEPLYKGGALPKLQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGCANMHDLNWGCSHGHIAELPDVNVISVASSHENVHELSEQPTRLLQNLNCVGCPNIRKVFIPSTAHCSRMLFLNLSLSANLKEVDVACLNLSWLNLSNCSSLEVLKLECPRLTSLFLQSCNIDEEAIEAAISKCTMLETLDVRHCPKISSMSMVRLRAACSSLKRIYGSLSTS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00800 956 Gene3D Ribonuclease Inhibitor 712 806 IPR032675 -
Cca05g00800 956 SUPERFAMILY L domain-like 639 950 - -
Cca05g00800 956 SMART LRR_CC_2 672 697 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 892 916 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 917 942 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 541 571 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 513 537 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 773 813 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 357 382 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 646 671 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 748 772 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 404 429 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 583 613 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 331 356 IPR006553 -
Cca05g00800 956 SMART LRR_CC_2 720 745 IPR006553 -
Cca05g00800 956 ProSiteProfiles F-box domain profile. 154 200 IPR001810 GO:0005515
Cca05g00800 956 Gene3D Ribonuclease Inhibitor 807 953 IPR032675 -
Cca05g00800 956 PANTHER OS10G0396666 PROTEIN 66 917 IPR044703 GO:0010252|GO:1905393
Cca05g00800 956 Pfam F-box-like 162 202 IPR001810 GO:0005515
Cca05g00800 956 PANTHER OS10G0396666 PROTEIN 66 917 - -
Cca05g00800 956 SUPERFAMILY L domain-like 331 685 - -
Cca05g00800 956 SMART fbox_2 160 200 IPR001810 GO:0005515
Cca05g00800 956 Gene3D Ribonuclease Inhibitor 403 561 IPR032675 -
Cca05g00800 956 Gene3D Ribonuclease Inhibitor 152 402 IPR032675 -
Cca05g00800 956 Gene3D Ribonuclease Inhibitor 562 711 IPR032675 -
Cca05g00800 956 SUPERFAMILY L domain-like 195 397 - -
Cca05g00800 956 SUPERFAMILY F-box domain 153 213 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00800 Cca-Chr5 22258564 22266794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00800 - - gmx:100782842 1650.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00800 05 22258564 22266794 Cca05g00800 05 22258564 22266794 ECH