Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00798 ATGATAGCTTACTTAGAACACTTCGTGCACGGAAACGACACAGAATCCAAGCCAAACGACGACGTCGCGGGCCTCGAGGGCGCGTTCCACTTCGGCGCCCCGGCCGCCGCCGCAAAGGACTTCGGCGGGATGAAATCCGCCGCGCCGCTGGCCGTGATACGCCCCGCCTCGGGCGCCGACGTGGCGCGCGCGGTGAGGGCTGCGGCGCGCACGGCGAACCTGACGGTGGCGGCGCGCGGCAACGGGCACTCCATCAACGGGCAGGCCATGGCGGAGAACGGCCTCGTCCTGGACATGCGCGCCATGGAGGAGGAGGAGGACCACCTCTCTCTGTCTCACCGCGACGGTTCCCTATACGTCGACGTTTCGGGAGGGGCATTATGGGAAGATGTCCTGAAACGGTGCGTTTCGCAGTTCCGCGTGGCGCCGCGCTCGTGGACCGATTACCTCGGGTTGACCGTGGGAGGAACGCTCTCCAACGCCGGCGTCAGCGGCCAGGCCTTCCGTTACGGCCCGCAAACGTCGAACGTGACGGAATTGGAAGTGGTGACGGGGAAAGGCGAAATCTTAGTATGCTCGGAAGGCCAAAATTCGGAGCTTTTCTTCGCAGCCCTCGGCGGGCTGGGCCAGTTCGGCATCATAACCCGAGCCCGCGTGGCTGTTCAACAAGCCCCAGACATGGTGAGATGGATAAGGGTTGTGTACTCAGAGTTTGAGGAGTTCACTAGCGACGCAGAGTGGCTGGTGACACTGCAAGAGCGTGACGGTTTTGACTACGTGGAAGGGTTTGTTTTCGTGAACAGCGATGACCCTTGCAACGGGTGGCCCACTGTGCCCGTGGGCCCCAACCAGCGCTTCGACCCGGCCCGTCTGCCTGCTCGGGCTGGCCCGGTTCTCTATTGCTTAGAACTGGCGCTTCATTATCGTAACGAAGACCACCCTTCCGCTGTTAATATGGAAGTGGATCGATTACTTGGACGGCTAGGATTCGTTGAGGGTCTAAAATTCAGCGTGGACGTGACATACATGGAATTCCTGCTACGTGTGAAGCGCGTGGAGGAAGATGCAAAAGCCAACGGCATCTGGGACGCACCCCACCCATGGCTCAACCTGTTCGTCTCCAAGTCCAACATCGCTGAATTTGATCGTCAAGTGTTCAAGAAAATCCTCAAGCACGGTGTTGGTGGCCCCATTCTAGTGTACCCTCTATTGCGAACCAAGTGGGATAGTCGACACTCGGTAGTGGTGCCGGACAGCAACATCTTCTACATCATAGCGTTGCTCCGATTTATTCCACCACCCCCGAAGGGACCACCTACGGAAGTGTTGGTGGAACAAAACCATGAGATTATTCAGTTATGCCACAACAGAGGCTTTGATTTCAAGTTGTATCTCCCTCACTACCAGTCGCAGGAGAACTGGATGCGACACTATGGAGATAAGTGGACCAGATTCGTCGATAGAAAGGCCACCTTTGATCCCTTCGCTATTCTTGCACCTGGACAGAAAATTTTTTCACGAATCCCTCAACCCTTCCCTATCACATAA 1548 0.5724 MIAYLEHFVHGNDTESKPNDDVAGLEGAFHFGAPAAAAKDFGGMKSAAPLAVIRPASGADVARAVRAAARTANLTVAARGNGHSINGQAMAENGLVLDMRAMEEEEDHLSLSHRDGSLYVDVSGGALWEDVLKRCVSQFRVAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELEVVTGKGEILVCSEGQNSELFFAALGGLGQFGIITRARVAVQQAPDMVRWIRVVYSEFEEFTSDAEWLVTLQERDGFDYVEGFVFVNSDDPCNGWPTVPVGPNQRFDPARLPARAGPVLYCLELALHYRNEDHPSAVNMEVDRLLGRLGFVEGLKFSVDVTYMEFLLRVKRVEEDAKANGIWDAPHPWLNLFVSKSNIAEFDRQVFKKILKHGVGGPILVYPLLRTKWDSRHSVVVPDSNIFYIIALLRFIPPPPKGPPTEVLVEQNHEIIQLCHNRGFDFKLYLPHYQSQENWMRHYGDKWTRFVDRKATFDPFAILAPGQKIFSRIPQPFPIT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00798 515 Pfam FAD binding domain 49 193 IPR006094 GO:0050660
Cca05g00798 515 Gene3D - 37 506 IPR016167 -
Cca05g00798 515 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 224 IPR016166 GO:0071949
Cca05g00798 515 PANTHER GULONOLACTONE OXIDASE 34 510 - -
Cca05g00798 515 SUPERFAMILY FAD-binding/transporter-associated domain-like 33 221 IPR036318 GO:0050660
Cca05g00798 515 Gene3D - 99 226 IPR016169 -
Cca05g00798 515 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 225 505 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca05g00798 515 SUPERFAMILY FAD-linked oxidases, C-terminal domain 225 505 IPR016164 GO:0003824|GO:0050660
Cca05g00798 515 Gene3D - 228 464 IPR016170 -
Cca05g00798 515 PANTHER CYTOKININ DEHYDROGENASE 7 34 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00798 Cca-Chr5 22126197 22131038 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00798 K00279 - gmx:100816566 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00798 05 22126197 22131038 Cca05g00798 05 22126197 22131038 ECH