Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00795 ATGGGTGAAGCTCCAGAAGTGTTCTACATTAATGGCTTCTCAAAGTTTGGCCATGAAACCCAACAAAACCACGTCAATGATCAGAACCATGATTCTTCTTGGTACGAGGAATTCATCGATGAGGATTTAAAATGGTCCTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGCGAGTACCAGGATATTGCCCTGTTAGATACCAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGAAAGATGCAGAGTGCTGAAACAGATGAATTCATTTATCACGAATGCTTGATTCATCCCCCTCTTTTATGCCACCCCAACCCCAAAACCGTGTTTATAATGGGTGGAGGTGAAGGTTCTTCAGCTAGGGAAGCCCTTAAGCACAGGTCAATGGACAGAGTAGTCATGTGCGATATAGACAAGGAGGTGGTGGATTTCTGTCGAAAATACTTGATTGCAAATAGGGAGGCATTTTCTCATAAGAAGCTCGACCTTGTCATCAATGATGCCAAGGCTGAATTGGAGAAGAGAAAGGAGAAGTTTGATATCATCATTGGAGATTTGGCAGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACCAAGTCCTTCTATGAGAAAATCCTGAAGCCCAAACTCAATGATAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATATTCACACACAAGGAGGTCTTCACTTCTATATATAACACAATCAAACAAGTCTTCAAATATGTGATTGCATATACGACTCATGTTCCATCTTTTGCCGACACATGGGGATGGGTTATGGCTTCAGATCAACCACTATCGATTTGCGCTGAAGAAATGGACAGAAGAATCGAAGCAAGAATAGATGGGGAACTTCTCTATCTCAATGGTGCTTGGTTCCATTCATCTACCACCATGAACAAAACTGTTTACCAATCGCTACAGAATGAAACTCACGTGTACACGGAAGAAAATGCTAGATTTGTTCCTGGACATGGCATGGCTTTTCGTCTCTAA 1014 0.425 MGEAPEVFYINGFSKFGHETQQNHVNDQNHDSSWYEEFIDEDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSSAREALKHRSMDRVVMCDIDKEVVDFCRKYLIANREAFSHKKLDLVINDAKAELEKRKEKFDIIIGDLADPLEDGPCYQLYTKSFYEKILKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIEARIDGELLYLNGAWFHSSTTMNKTVYQSLQNETHVYTEENARFVPGHGMAFRL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00795 337 PANTHER BNAA02G04280D PROTEIN 1 336 - -
Cca05g00795 337 Coils Coil 158 178 - -
Cca05g00795 337 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 336 - -
Cca05g00795 337 Gene3D Vaccinia Virus protein VP39 85 336 IPR029063 -
Cca05g00795 337 Gene3D Spermidine synthase, tetramerisation domain 32 84 IPR037163 -
Cca05g00795 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 269 IPR030374 -
Cca05g00795 337 Pfam Spermine/spermidine synthase domain 88 266 - -
Cca05g00795 337 Pfam Spermidine synthase tetramerisation domain 34 85 IPR035246 -
Cca05g00795 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 314 IPR029063 -
Cca05g00795 337 CDD AdoMet_MTases 113 221 - -
Cca05g00795 337 Hamap Polyamine aminopropyltransferase [speE]. 33 314 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00795 Cca-Chr5 21925101 21930220 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00795 K18787 - gmx:100784972 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00795 05 21925101 21930220 Cca05g00795 05 21925101 21930220 ECH