Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00774 ATGGCTTCCATGGCTTTCTCTACCTCCTTCTTCACACCCCTCCATGATTTCAGCCAAGCTAGAACAAACCCTATTGCTCCACTCTCTTCCTCTTTCATCAAATCCTCCTTTGCTTCTTCCAAGTCAACTTTTTTTCATCCTGCCCTTCCTCTACAACCCTCATCCAATTTTCCCAGGCTTTTTGTAAAGCCCAGGTCTTTCTCAGTTCTTGCAAGAGCTGCCACAGAAAAAACCATTTATGATTTTACTGTCAAGGATATTGACAGGAAAGATGTTGCTCTTAACAAATTTAAGGGGAAGGTTCTATTGGTTGTCAATGTTGCTTCACGATGTGGTTTGACATCATCCAATTACTCAGAGCTGTCACGCTTGTATGAAAAATATAAAAATCAAGGTTTGGAGATTCTAGCTTTCCCTTGCAATCAATTTGGCATGCAGGAGCCTGGATCAAATCAAGATATTAAGCAGTTTGCTTGCACTCGATATAAAGCTGAATTTCCAATTTTTGATAAGGTTGATGTGAATGGACCATTTACAGCTCCGGTTTACCAGTTTCTGAAATCAAGTGCTGGAGGCTTTCTGGGTGATCTTATTAAATGGAATTTTGAGAAATTCTTGGTTGATAAAAATGGTAAAGTTGTTGAAAGATACCCACCAACAACGTCTCCCTTTCAAATTGAGAAGGATATCCAGAGGTTACTTGCTGCGTGA 711 0.3994 MASMAFSTSFFTPLHDFSQARTNPIAPLSSSFIKSSFASSKSTFFHPALPLQPSSNFPRLFVKPRSFSVLARAATEKTIYDFTVKDIDRKDVALNKFKGKVLLVVNVASRCGLTSSNYSELSRLYEKYKNQGLEILAFPCNQFGMQEPGSNQDIKQFACTRYKAEFPIFDKVDVNGPFTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQRLLAA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00774 236 ProSitePatterns Glutathione peroxidases signature 2. 136 143 IPR029760 -
Cca05g00774 236 ProSitePatterns Glutathione peroxidases active site. 99 114 IPR029759 -
Cca05g00774 236 PANTHER GLUTATHIONE PEROXIDASE 18 236 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 ProSiteProfiles Glutathione peroxidase profile. 69 236 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 PANTHER PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC 18 236 - -
Cca05g00774 236 CDD GSH_Peroxidase 78 230 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 ProSiteProfiles Thioredoxin domain profile. 73 235 IPR013766 -
Cca05g00774 236 Gene3D Glutaredoxin 66 236 - -
Cca05g00774 236 Pfam Glutathione peroxidase 79 187 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 PRINTS Glutathione peroxidase family signature 97 114 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 PRINTS Glutathione peroxidase family signature 133 149 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 PRINTS Glutathione peroxidase family signature 198 207 IPR000889 GO:0004602|GO:0006979
Cca05g00774 236 SUPERFAMILY Thioredoxin-like 78 235 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00774 Cca-Chr5 21475352 21480729 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00774 K00432 - gmx:100305775 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00774 05 21475352 21480729 Cca05g00774 05 21475352 21480729 ECH