Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00679 ATGGCTAGTGGCTATTGGCTCTACGGTTTCGTAACAGTCATTCACACGCTTCACTTCGTTTGGTCAATCAGAACCGTCCATGGCATGATCCCACGGTCCCCATTACAATGCACCGCTTCAGGATGCACCCTCAGCAACAGCTACGGCGCGTGGGGCGACCGCAAGGACTGTTCCGCCCTCAACGTGACCTACCCCACAACCGAAGACCAACTTCGTTCGGCAGTTTCCTACGCTGTCCGTAACAACCTCAAGGCCAAGGTTGTCACCGGATTCTCCCACACAATCCCCAAGCTCGCATGCCCACAGAACGCCACAGTGTTCATCAGCACAGACAAGTACAACTCCACCATCCAAATCGACGCCGTTAATTTGGTTGTGACGGTTGATGCGGGCGTTGGGCTTCGCCAATTGATTGACGCTGTTGAAGCCAAGGGCTTCAGCTTGGTGGCAGCGCCTTATTGGGAGGGTGTCACTGTTGCAGGCCTTATCAGCACTGGGGCGCACGGTAGCTCTTGGTGGGGACGCGGTGGTGCGGTTCATGATTATGTTATTGGAATTACTCTTGTTGTTCCTGCTTCTAAGTCTGAAGGCTATGCCAAAGTTTTGAGGTTGGACGCACAGGATCCGTTGCTTAACGCTGCCAAAGTGTCACTCGGAGTTCTAGGTGCTATATCCAAGGTAAAGTTATCACTTGAGCATAGGTTCAAAAGAAGCATAACATACAATTTCACAGGAGATGATGGCATCGAAGATGTGTACACAGAGCATGCAAAACAGTATGAATTTGCGGATATAACTTGGTATCCGTCGAGACACACAGCAGTGTACAGATATGATTCCAGGGTTCCTATAAATGCATCGGGTGATGGACTTAATGACTTCATTGGATTTCAACCCAATCCTATCTTGATCTCAGAATCAGTTAGAGCAGCAGAAAAACTATTAGAAAGTACAAAAAACCCAAATGGGAAATGCTTAACGGCAGCTACTACTTTGGGATTCAAGAAACTAGCAGGAAACGGGTTGAAGAACAATGGGATGATTTTCAGTGGGTACCCAGTAGTGGGTTTCCAGGGCAAAATGCAAACTTCAGGTTCATGCTTATACTCAACAAGAATCGACACCTCCTGTGCTTGGGATCCAAGAATCAAAGGTTTTTTCTTCTACGAGAGCACCGCAATCTTCCCTGCATCCAAATTTGGAGACTTCGTCCGTGACGTGAGAAAACTTCGCGATCTCAACCCACAAAATTTCTGTGGTGTGGACAACTATAACGGCTTGCTCATTCGTTTCATCAAAGCCTCAAGTGCATACCTAGGACAACCCGAAGACTCTGTGGTCGTTGATTTCAACTACTATCGTGCCAACGACCCATCAGATCCTAGACTCAACCAAGATGTGTGGGAGGAAGTGGAGCAATTAGCGTTCTTCAAGCATGGGGCTAAGCCACATTGGGCCAAGAACAGGAACATAGCATTCTTGGGAGTGCAACAAAAGTATCCCAGGTTTAACATGTTTGTTGCAGCAAAACAAAAAATGGACCCTCAAAATGTGTTCTCTAGTAAATGGTCGGATGACATACTTTATGGCAAGGAATTGGAAAAATTTGATGGGTGTGCTTTGGAGGGACAATGCATTTGTAGTGAAGATAAACATTGTAGCCCCCAAAAGGGGTATCTCTGCAGCCCTGGCCTTGTCTACAAGGAAGCTAGAGTTTGTAGATACTTACCTTCCTCCATCCCATCATCATCCACCGCATGA 1761 0.4719 MASGYWLYGFVTVIHTLHFVWSIRTVHGMIPRSPLQCTASGCTLSNSYGAWGDRKDCSALNVTYPTTEDQLRSAVSYAVRNNLKAKVVTGFSHTIPKLACPQNATVFISTDKYNSTIQIDAVNLVVTVDAGVGLRQLIDAVEAKGFSLVAAPYWEGVTVAGLISTGAHGSSWWGRGGAVHDYVIGITLVVPASKSEGYAKVLRLDAQDPLLNAAKVSLGVLGAISKVKLSLEHRFKRSITYNFTGDDGIEDVYTEHAKQYEFADITWYPSRHTAVYRYDSRVPINASGDGLNDFIGFQPNPILISESVRAAEKLLESTKNPNGKCLTAATTLGFKKLAGNGLKNNGMIFSGYPVVGFQGKMQTSGSCLYSTRIDTSCAWDPRIKGFFFYESTAIFPASKFGDFVRDVRKLRDLNPQNFCGVDNYNGLLIRFIKASSAYLGQPEDSVVVDFNYYRANDPSDPRLNQDVWEEVEQLAFFKHGAKPHWAKNRNIAFLGVQQKYPRFNMFVAAKQKMDPQNVFSSKWSDDILYGKELEKFDGCALEGQCICSEDKHCSPQKGYLCSPGLVYKEARVCRYLPSSIPSSSTA 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00679 586 Gene3D - 114 232 IPR016169 -
Cca05g00679 586 PANTHER L-GULONOLACTONE OXIDASE 3 35 575 - -
Cca05g00679 586 Gene3D - 390 490 - -
Cca05g00679 586 TIGRFAM pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase 31 574 IPR010030 -
Cca05g00679 586 Pfam FAD binding domain 62 191 IPR006094 GO:0050660
Cca05g00679 586 ProSiteProfiles PCMH-type FAD-binding domain profile. 55 234 IPR016166 GO:0071949
Cca05g00679 586 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 231 IPR036318 GO:0050660
Cca05g00679 586 Pfam D-arabinono-1,4-lactone oxidase 429 525 IPR007173 GO:0003885|GO:0016020
Cca05g00679 586 PANTHER GULONOLACTONE OXIDASE 35 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00679 Cca-Chr5 17326328 17328544 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00679 K00103 - gmx:100778616 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00679 05 17326328 17328544 Cca05g00679 05 17326328 17328544 ECH