Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00677 ATGGCTTGTCTTCAATTCCTTCCGCAAGCGCTATCAGAAACCCCTTCCAAACTGCTTCACCGCCGATTCCATCGCCACTGCCTCGTTGCTAAACGCACCTCTCTCAGCGGCTCCAACCAATCTGGGGACTCGCTTCATTCTAAAACTCAAGTGTCTCGTGTTCCGCTTTTGACTTCCTCGGAGGCCTATGAAAGGCTAAAAACGTTCAGAGGAAAGATAAATGGCAAGCAACAATTCCTTGCCATGTATTCTAGTATATTTGGTGGGATAACAACAGACCCAGCTGCTATGGTTATTCCCATGGATGACCACATGGTCCATAGGGGCCACGGTGTATTTGATACTGCAGCAATAGTGGACGGATACTTATATGAGCTAGATCAACACCTTGACCGCTTTTTAAGTTCAGCATCCATGTCTAAAATAGATCCCCCATTTGATCGTGGAAGCATACGAAGAATACTCATAGAAACTGTAAGTGCTTCCAAGTGTAGAAAAGGGTCACTAAGATATTGGCTCTCAGCAGGACCTGGTGACTTTCAGTTATCACCCTCTGGCTGCCACCAATCAAGTCTTTATGCAGTAGTAATACAGGATCTGTCACCATCGTCGCTTAATTTCAAGGGAGTTAAAGTCATTACTTCATCTATCCCCATTAAAGACCCCCAGTTTGCTATCACTAAGAGTGTGAATTATCTTCCAAATGTGCTCTCAAAGGTGGAAGCTGAAGAAGCTGGTGCTTTTGTGGGCATTTGGCTTGATGGGGAAGGTTTTGTTGCTGAAGGGCCTAATATGAATGTGGCTTTTGTCACTAAAGAGAAGGAACTTATAATGCCTTACTTTGACAAAATTTTAAGTGGCTGCACCGCTAAGAGAGTTTTAACCCTTGCTGAGAGTTTGTTAAGGGAGGGTAAGCTTAAGGGAATAATGGTGAAAAATGTGACTGTTGAGGAAGGTAAGAAAGCGGATGAAATGATGCTTCTTGGCAGTGGAGTTCTTGTTTGCCCTGTAGTGCAGTGGGATGAGCAGGTTATTGGTGATGGTGAGTGCTTTATTTTTACCATCTGCACCAAAGAATGA 1080 0.4407 MACLQFLPQALSETPSKLLHRRFHRHCLVAKRTSLSGSNQSGDSLHSKTQVSRVPLLTSSEAYERLKTFRGKINGKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIVDGYLYELDQHLDRFLSSASMSKIDPPFDRGSIRRILIETVSASKCRKGSLRYWLSAGPGDFQLSPSGCHQSSLYAVVIQDLSPSSLNFKGVKVITSSIPIKDPQFAITKSVNYLPNVLSKVEAEEAGAFVGIWLDGEGFVAEGPNMNVAFVTKEKELIMPYFDKILSGCTAKRVLTLAESLLREGKLKGIMVKNVTVEEGKKADEMMLLGSGVLVCPVVQWDEQVIGDGECFIFTICTKE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00677 359 PANTHER BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE-LIKE 52 350 - -
Cca05g00677 359 Gene3D - 200 354 IPR043132 -
Cca05g00677 359 PANTHER AMINO-ACID AMINOTRANSFERASE 52 350 - -
Cca05g00677 359 CDD PLPDE_IV 103 349 - -
Cca05g00677 359 Pfam Amino-transferase class IV 111 339 IPR001544 GO:0003824
Cca05g00677 359 Gene3D - 59 198 IPR043131 -
Cca05g00677 359 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 87 349 IPR036038 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00677 Cca-Chr5 17216446 17218682 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00677 K18482 - gmx:100794026 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00677 05 17216446 17218682 Cca05g00677 05 17216446 17218682 ECH