Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00662 ATGGGAAAATCTGACTATGATGAAGCTGATTCTGGAACTAGAAGTGGAAACGAATCAGGAAATAATATGAAGAGAGGGTTGTTTCAATCAGCAGCTGTCAAGGGGGATCATTTTGATGGCAAGAATCACATGAATAAAATTACTAAGGCTACAAATTCAAACACTCAACCCAGCTGCACTTTCTGCAAGGGTAAAAATGGTTGCCGAGTCGTGCGCTCGAGAACAAAAATAATGAATATTCTGATCAAGAGTGGAAAGCCTCAGGAAGCTGTTATCATTTTTGAAAATCTGTTTGAAGGAGGGCACCAACCATCTTTAGCAGCATATACAACACTGTTAAATGCCTTGACCACTCAGAAACGCTTCGAGCCTATACATTCCATTGTTTCACAGGTGGAAGAAAAACAGATGAAGCCTGATTCAATATTTTTTAATGCTCTTGTAAATGCATTTGCTGAATCCGGGAACATGGAGGATGCCATGAAAGTTGTTCAGAAAATGAAAGAAAGTGGAGTAAAACTTAGTACTAGTACTTATAACACATTGATAAAAGGGTATGGGATTGCAGGTAATCCTGATGAGTCAATGAAGTTGCTAGATCTTATGTCAACGGAAGGAAATTTGAAACCCAATATCAAGACATACAATATGCTTATCAGAGCATGGTGTAAACTGAAAAACATCTCTGAGGCATGGAATGTGGTGAATAAGATGTCTGCTTCTGGAATGCAACCAGATGTTGTTACATTCAACACGATAGCAACCGCTTATGCTCAGAATGGGAAGACTGCTCAGGCTGAAGCAATGATTTTAGAGATGCAGAGGAATGGTTTAGAACCTAATGATAGAACTTGCACCATCATCATTAGTGGATATTGTAGAGAAGGTAAGGTAAAGGAAGCTCTAAGGTTCGTATACAGGATGAAGGATCTGGGGCTGCAGCCCAATCTTATTGTACTTAATTTGCTGGTTAATGGTTTTGTGGACATAATGGATCGAGATGGTGTCGATGAGGTGCTAAAGTTGATGGAAGAATTTCATATTCAACCTGATGTGATAACATATAGTACTATAATGAACGCATGGAGCCAAGCTGGATTCTTAGAAAAGTGCAAGGAAATCTACAATAACATGTTAAAATCTGGTGTAAAGCCGGATGCTCATGCTTATAGTATTCTTGCTAAAGGATATGTGAGAGCACAAGAAATGGAAAAAGCTGAAGAACTTTTAACTGCCATGACTAACTCAGGTGTCCACCCAAATGTTGTTATATTTACAAATGTCATAAGTGGATGGTGCAGTGTTGGCAGAATGGACAATGCCATCAGGGTTTTTGACAAGATGTGTGAATTTGGGGTTTCTCCAAATTTGAAGACCTTTGAGACACTAATTTGGGGATATGCAGAAGCGAAGCAGCCATGGAAATCAGAAGGAATACTCCAAATAATGGAAGAGTTTCACGTTCAACCCAAGAAATCAACCATTTTGCTTGTTGCAGAAGCTTGGTGTTTTGCTGGATTGAAAGAAGAGGCAAACACACTACTGAGTAGAGTAAAAACTGAGCACATGACCAATTCAATAGAGGAAGAGGACAATATACATGCTAAAAGTTCAGAGAAAATTTACCAAAAGCCACCTAGTAATGCTCCTTTCTTACAGATTCCTTCTATGTCTTCCACTGACCAGAAGGGTTCAGCTTTGACAGCTAGAAGAAATAGAAGGCTCCTTAGAGATGGTGATTTGGAGACTCCATTGCTCACCACAAAATTCAAGTGTCATTCTCAAATTTGTAGATTTGGTGAAGGATTTTCCATTATGTGCAAACAGTTTCAAGGACAGCATGGTACATACCAACTTGCAAATTCATGTACAGCAGTATTCTTAAACTAA 1890 0.3894 MGKSDYDEADSGTRSGNESGNNMKRGLFQSAAVKGDHFDGKNHMNKITKATNSNTQPSCTFCKGKNGCRVVRSRTKIMNILIKSGKPQEAVIIFENLFEGGHQPSLAAYTTLLNALTTQKRFEPIHSIVSQVEEKQMKPDSIFFNALVNAFAESGNMEDAMKVVQKMKESGVKLSTSTYNTLIKGYGIAGNPDESMKLLDLMSTEGNLKPNIKTYNMLIRAWCKLKNISEAWNVVNKMSASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNGLEPNDRTCTIIISGYCREGKVKEALRFVYRMKDLGLQPNLIVLNLLVNGFVDIMDRDGVDEVLKLMEEFHIQPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEELLTAMTNSGVHPNVVIFTNVISGWCSVGRMDNAIRVFDKMCEFGVSPNLKTFETLIWGYAEAKQPWKSEGILQIMEEFHVQPKKSTILLVAEAWCFAGLKEEANTLLSRVKTEHMTNSIEEEDNIHAKSSEKIYQKPPSNAPFLQIPSMSSTDQKGSALTARRNRRLLRDGDLETPLLTTKFKCHSQICRFGEGFSIMCKQFQGQHGTYQLANSCTAVFLN 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Cca05g00662 629 Pfam PPR repeat 207 239 IPR002885 -
Cca05g00662 629 Pfam PPR repeat family 420 468 IPR002885 -
Cca05g00662 629 Pfam PPR repeat family 350 398 IPR002885 -
Cca05g00662 629 Pfam PPR repeat family 139 186 IPR002885 -
Cca05g00662 629 Pfam PPR repeat family 245 294 IPR002885 -
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Cca05g00662 629 MobiDBLite consensus disorder prediction 1 23 - -
Cca05g00662 629 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 629 - -
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 144 175 IPR002885 -
Cca05g00662 629 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
Cca05g00662 629 Gene3D Tetratricopeptide repeat domain 415 489 IPR011990 GO:0005515
Cca05g00662 629 Gene3D Tetratricopeptide repeat domain 336 414 IPR011990 GO:0005515
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Cca05g00662 629 SUPERFAMILY HCP-like 148 454 - -
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cca05g00662 629 Gene3D Tetratricopeptide repeat domain 73 241 IPR011990 GO:0005515
Cca05g00662 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Cca05g00662 629 PANTHER OS01G0228400 PROTEIN 1 629 - -
Cca05g00662 629 Gene3D Tetratricopeptide repeat domain 242 333 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00662 Cca-Chr5 16456470 16461914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00662 86 527 Glycosyltransferase AT1G05670 27.149 7.84e-56 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00662 K17710 - gmx:100779093 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00662 05 16456470 16461914 Cca05g00662 05 16456470 16461914 ECH